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P4 3 Release Announcement

'''Note to users of Mac OS X 10.7.5 and above:''' The default [http://support.apple

2 KB (232 words) - 12:12, April 15, 2013
PROMPT

'''Please note that PROMPT is only available for Protege 3.x and earlier series. ''' If yo

5 KB (754 words) - 15:30, July 23, 2014
Jambalaya 2.3.5

Please note that this version of Jambalaya is bundled with the "full" installation of P

401 bytes (46 words) - 15:25, August 12, 2008
OntoViz

NOTE: you may need to modify your file structure to match the path in your [[pro ...paper example project that comes with all installations of Protege. Please note that these screenshots were created using an older version of Protege.

10 KB (1,576 words) - 08:51, July 19, 2017
Scalability and Tuning

...ed and the cache is full. Thus the first time a frame is accessed you may note a small (1 second or two) delay. After that the frame will probably remain

4 KB (765 words) - 17:52, May 22, 2008
Setting Heap Size

...e several ways of setting the heap size depending on how you run Protege. Note that for 64 bit windows machines there is a but in InstallAnywhere that pre Note that on Windows machines if you have installed the version of Protege that

6 KB (943 words) - 21:59, February 17, 2022
Collaborative Protege

...sion of [http://protege.stanford.edu/download/download.html Protege 3.*]. Note, Protege 4.* is not compatible with collaborative Protege yet. ...in Internet forums. The bottom component shows the details of the selected note in the notes tree.

24 KB (3,748 words) - 13:05, February 12, 2011
Protege Client-Server Tutorial

'''Note. There is a known Java bug in Java 1.6.0_29 and Java 1.7 that affects the s

5 KB (745 words) - 14:05, January 24, 2012
Changes Tab

'''Note:''' This functionality is available in stand-alone mode. In client-server m

7 KB (1,066 words) - 14:11, December 16, 2009
UMLS Tab

''Please note: This documentation contains screenshots of an outdated version of Protege

11 KB (1,843 words) - 16:42, November 5, 2008
UMLS Tab 2.0

Please note that the license is free of charge. 

583 bytes (75 words) - 10:28, June 17, 2011
ProtegeDesktopUserDocs

* [[Protege4NamingAndRendering|Naming and rendering of entities]] - a note on naming things in OWL and configuring Protege to support your naming conv

4 KB (564 words) - 15:19, December 22, 2021
AddingRemovingTabs

=== Note ===

2 KB (182 words) - 15:53, May 27, 2008
Protege4GettingStarted

Please also see this note about [[Protege4NamingAndRendering|naming and rendering of entities]].

10 KB (1,586 words) - 20:25, May 23, 2016
Protege3DevDocs

'''Please note that this documentation refers *only* to the Protege 3.x series. For Proteg

4 KB (537 words) - 23:07, May 23, 2016
DL Query

Please note that the DL Query tab is part of the [http://protege.stanford.edu/download/

1 KB (160 words) - 16:46, August 12, 2008
DL Query 1.0

Please note that the DL Query tab is part of the standard Protege distribution. It is

398 bytes (51 words) - 14:28, August 4, 2009
Matrix

Please note that the Matrix plug-in is not bundled with the standard Protege distributi

1 KB (162 words) - 17:08, March 4, 2010
SolvingClassLoaderProblems

Note - since the first writing of this document - we have added [[SolvingClassLo ....osgi.debug distribution to the Protege 4 OWL editor's plugin directory. (Note the exclusion of the org.eclipse.osgi_3.3.1.R33x_v20070828.jar and org.

9 KB (1,397 words) - 17:42, August 23, 2009
ProtegeReasonerAPI

'''Note.''' Even if these functionalities are available in Protege 3.x, we do recom

11 KB (1,483 words) - 18:37, November 30, 2009
Protege4Shortcuts

| Change the URI for the active ontology (note, this does not change the URIs of any entities)

11 KB (1,577 words) - 20:58, May 23, 2016
ConvertingToDatabaseProject

'''Note: We do provide a script that does the streaming and non-streaming conversio

6 KB (697 words) - 17:31, April 10, 2009
ProgramaticLuceneQueryAccess

This note will describe how to programatically

4 KB (528 words) - 06:59, October 2, 2009
OntoBase

Note: JDBC driver corresponding to entered URL must be provided either by placin Note: you can also use the drivers from Ontobase source repository:

4 KB (671 words) - 08:21, March 2, 2011
HTML Chat

== PLEASE NOTE ==

3 KB (481 words) - 18:30, July 21, 2008
ProvidePluginDocs

Note that "about" information is displayed within a frame in Protege, but if you ...<code>plugin.properties</code> file for the Standard Extensions plug-in. Note that this plug-in only provides documentation information, but not "about"

4 KB (674 words) - 17:02, February 23, 2008
PluginDistribution

...a Protege plug-in that has been packaged for distribution in ZIP format. Note the "Path" in the ZIP file, which allows a user to unzip the file to the co

2 KB (301 words) - 16:55, May 29, 2008
Creating users

'''[[Note:]]'''

3 KB (422 words) - 15:56, May 27, 2008
UseOWLClassesPanel

'''Note''': If you loaded the OWL ontology by using the <code>Project</code> method

3 KB (365 words) - 16:07, May 27, 2008
Graph Widget Tutorial OWL

...y default, you can customize individual forms on the Forms tab. Please note that the graph widget is only allowed for object properties that accept mul ...s activities that will take place during the trial. Another class to take note of is the "Clinical_Trial_Visit" class, which represents a participant's vi

13 KB (2,132 words) - 20:17, March 22, 2008
WebProtegeDeveloperHowTo

''Please note that WebProtege uses:'' # Please note that WebProtege depends on the sources from the Protege application and sev

9 KB (1,294 words) - 18:14, April 25, 2013
Working with the Database Backend in OWL

This note will show by example how to convert an owl project and its imports to a dat Note that if Protege is already open and you don't see the welcome screen then y

9 KB (1,440 words) - 13:15, January 20, 2010
SetBrowserSlotPattern

'''NOTE''': The browser pattern is always set for a class and it applies to the ind

3 KB (477 words) - 16:06, May 27, 2008
How Owl Imports Work

In this note we will describe what this innocent little paragraph is saying and what it Note that usually an ontology has a name that does not correspond to its physica

14 KB (2,405 words) - 11:44, July 25, 2011
Protege Web Browser

Please note that this application is now very outdated. The last version of Protege th ...our Protege plug-in folder into the "lib" directory and that should work). Note that if you need some specific version of Protege to make your plug-in work

7 KB (1,166 words) - 12:16, October 23, 2008
MultiThreadingConsiderationsInProtege3

...de ran fine as long as the user did not touch the mouse or keyboard. This note explains the source of these deadlocks and how they can be avoided (in the

8 KB (1,200 words) - 04:52, October 15, 2012
UseProtegeFormsInApplications

''Please note that the following code works with both Protege-Frames and Protege-OWL onto

2 KB (234 words) - 16:50, June 3, 2008
CreatingSynonyms

...ass with this property and create new classes using this metaclass. Please note that this solution is more relevant to the frame-based version of Protege,

1 KB (229 words) - 18:04, June 20, 2008
RDF Backend

|Description=Create, import, and save RDF(S) files. Please note that this back-end was developed specifically for frame-based ontologies (n

2 KB (224 words) - 17:54, June 21, 2010
DataMaster 1.3.1

'''Note: this and newer versions of the DataMaster plug-in will work only with Prot

1 KB (204 words) - 19:17, December 17, 2009
Protege Axiom Language (PAL) Tabs

''Please note: these screenshots were taken with an older version of Protege called "Prot

3 KB (437 words) - 17:07, July 7, 2008
PSM Librarian

...domain knowledge in terms that are appropriate for activating the PSM. ''(Note that the current version of the PSM Librarian tab does not support the actu

5 KB (741 words) - 17:52, July 21, 2008
OntologyBeanGenerator

** Note: The JADE ontologies are located in the plugin directory (''PROTEGE_INSTALL ** Press the generate button (note: old generated files will be overwritten)

5 KB (704 words) - 13:15, October 17, 2016
Protege4NamingAndRendering

== Note on naming in OWL ontologies ==

9 KB (1,451 words) - 21:03, May 23, 2016
Protege4Preferences

* '''Full regular expression search''' note that searching using full regular expressions can be slow for large ontolog

3 KB (371 words) - 20:59, May 23, 2016
Protege-OWL 4 FAQ

...an.stanford.edu/mailman/listinfo/protege-user protege-user mailing list]. Note that you must be subscribed to the list in order to post messages. If you

6 KB (893 words) - 16:50, February 17, 2022
PrF UG classes

Note:

873 bytes (133 words) - 16:01, November 14, 2008
PrF UG classes add superclass

Note: If you cannot see the Superclasses pane, Note: If nothing happens when the class is dropped over a new superclass,

3 KB (527 words) - 17:21, November 13, 2008
PrF UG classes class editor

rect 600 21 685 48 [[#Note_Icons |Note icons]] === Note Icons ===

4 KB (633 words) - 17:22, November 13, 2008
PrF UG classes class icons

Note: To display all subclasses below a class,

4 KB (598 words) - 17:22, November 13, 2008
PrF UG classes class window

Note: You can also change the view from the default

4 KB (698 words) - 17:24, November 13, 2008
PrF UG classes classes tab

...72 55 855 84 [[PrF_UG_classes_class_editor#Note_Icons |Note icons]] ...36 90 441 141 [[PrF_UG_classes_class_editor#Note_Icons |Note icons]]

3 KB (410 words) - 17:26, November 13, 2008
PrF UG classes create class

...00 21 685 48 [[PrF_UG_classes_class_editor#Note_Icons |Note icons]]

2 KB (320 words) - 17:29, November 13, 2008
PrF UG classes creating multiple classes

Note: Extra Tab characters will be ignored.

4 KB (623 words) - 17:29, November 13, 2008
PrF UG classes edit template slots

Note that the slot has not been deleted from the knowledge base.

6 KB (1,040 words) - 17:30, November 13, 2008
PrF UG classes editing a class

The [[PrF_UG_windows_yellow_stickies|note]] icons To create a note for the current class,

6 KB (989 words) - 17:31, November 13, 2008
PrF UG classes find class

Note:

2 KB (257 words) - 17:32, November 13, 2008
PrF UG classes hide class

Note: If your class has a superclass which is hidden,

2 KB (407 words) - 17:32, November 13, 2008
PrF UG classes jump to superclass

Note:

2 KB (308 words) - 17:33, November 13, 2008
PrF UG classes references window

Note that {{#var:PrF}} provides standard slots

4 KB (733 words) - 17:33, November 13, 2008
PrF UG classes remove superclass

Note:

3 KB (395 words) - 17:37, November 13, 2008
PrF UG classes replace superclass

Note that when you replace the superclass of a class, Note that the slots of the moved class will automatically change

3 KB (494 words) - 17:38, November 13, 2008
PrF UG classes superclasses pane

Note:

2 KB (377 words) - 17:38, November 13, 2008
PrF UG classes template slot buttons

Note: Note:

4 KB (657 words) - 17:39, November 13, 2008
PrF UG classes view class

Note:

3 KB (514 words) - 17:40, November 13, 2008
PrF UG classes view references

Note:

3 KB (459 words) - 17:40, November 13, 2008
PrF UG classes view relations

Note: Note the following:

6 KB (1,088 words) - 17:40, November 13, 2008
PrF UG files

Note:

848 bytes (130 words) - 15:59, November 14, 2008
PrF UG files database backend

Note that this is a "flat" table that does not use any special database construc Note:

5 KB (779 words) - 18:45, March 5, 2009
PrF UG files export clips

Note, however, that because of the limitations of CLIPS with respect to {{#var:P

2 KB (271 words) - 17:46, November 13, 2008
PrF UG files export html

Note that if you do not click Save, Note that the default style sheet displays the icons for you.

5 KB (868 words) - 17:46, November 13, 2008
PrF UG files owl support

Note:

4 KB (634 words) - 17:46, November 13, 2008
PrF UG files rdf backend

Note: Note:

4 KB (689 words) - 17:47, November 13, 2008
PrF UG files rdf support

Please note the following limitations: Note that the use of RDF in {{#var:PrO}} is not necessarily compatible

8 KB (1,281 words) - 17:48, November 13, 2008
PrF UG files xml support

Note: Note:

2 KB (374 words) - 17:48, November 13, 2008
PrF UG forms

Note:

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PrF UG forms additional widgets

Note:

2 KB (341 words) - 17:50, November 13, 2008
PrF UG forms change widget config

(Note: If the [[PrF_UG_forms_form_configuration|Form Configuration]] dialog box i (Note: If the [[PrF_UG_forms_form_configuration|Form Configuration]]

3 KB (509 words) - 17:50, November 13, 2008
PrF UG forms changing form characteristics

Note:

3 KB (523 words) - 17:51, November 13, 2008
PrF UG forms custom instancerow

Note:

9 KB (1,415 words) - 17:53, November 13, 2008
PrF UG forms form edit pane

Note:

4 KB (585 words) - 17:55, November 13, 2008
PrF UG forms hide widget

Note:

2 KB (327 words) - 17:57, November 13, 2008
PrF UG forms modifying controls appearance

Note: Note:

1 KB (249 words) - 17:57, November 13, 2008
PrF UG forms select widget type

Note:

3 KB (437 words) - 17:58, November 13, 2008
PrF UG forms string widgets

Displays the string entry field as a yellow sticky note.

2 KB (334 words) - 17:58, November 13, 2008
PrF UG forms widget configuration

Note:

2 KB (299 words) - 17:59, November 13, 2008
PrF UG forms widget default types

Note:

3 KB (557 words) - 18:00, November 13, 2008
PrF UG inst

Note:

952 bytes (145 words) - 15:42, December 6, 2010
PrF UG inst class browser at instances

Note:

1 KB (225 words) - 18:03, November 13, 2008
PrF UG inst copy instance

Note the following:

4 KB (614 words) - 18:03, November 13, 2008
PrF UG inst display instance editor

Note:

4 KB (603 words) - 18:05, November 13, 2008
PrF UG inst entry field class

Note the following:

3 KB (428 words) - 18:06, November 13, 2008
PrF UG inst entry field instance

Note the following for fields of multiple cardinality: Note that any edits you make to this instance will appear in all locations

6 KB (940 words) - 18:07, November 13, 2008
PrF UG inst instance browser

Note:

2 KB (364 words) - 18:10, November 13, 2008
PrF UG inst instance buttons

Note that these icons have a similar action wherever they appear.

3 KB (520 words) - 18:11, November 13, 2008
PrF UG inst instance editor

=== Note Icons === The note icons

3 KB (456 words) - 18:11, November 13, 2008
PrF UG inst moving an instance

Note that the slots of the dragged instance will automatically change

2 KB (362 words) - 18:13, November 13, 2008
PrF UG inst standard fields

Note:

3 KB (470 words) - 18:16, November 13, 2008
PrF UG intro planning a project

Note that ontology modifications can be expensive;

4 KB (643 words) - 18:19, November 13, 2008
PrF UG intro what is protege

Note:

3 KB (486 words) - 18:20, November 13, 2008
PrF UG intro what is protege frames

Note:

2 KB (286 words) - 15:08, March 8, 2010
PrF UG meta

Note:

1,013 bytes (153 words) - 16:04, November 14, 2008
PrF UG meta change meta

Note that if the class currently uses a non-standard class,

2 KB (308 words) - 18:22, November 13, 2008
PrF UG meta change meta sub

Note that you only have to do this once;

2 KB (259 words) - 18:22, November 13, 2008
PrF UG meta change metaslot

Note that if the slot currently uses a non-standard slot metaclass,

2 KB (299 words) - 18:23, November 13, 2008
PrF UG meta change metaslot sub

Note that you only have to do this once;

2 KB (270 words) - 18:23, November 13, 2008
PrF UG meta metaslot create

Note: Before you create and use metaclasses,

2 KB (348 words) - 18:28, November 13, 2008
PrF UG meta metaslot intro

Note that slot metaclasses appear at the Classes tab as the :SLOT hierarc

1 KB (224 words) - 18:28, November 13, 2008
PrF UG projects

Note:

763 bytes (115 words) - 16:06, November 14, 2008
PrF UG projects activate included project

Note that you are still working with your including project

2 KB (238 words) - 18:30, November 13, 2008
PrF UG projects configure project

Note:

6 KB (948 words) - 18:31, November 13, 2008
PrF UG projects convert project

Note:

2 KB (309 words) - 18:31, November 13, 2008
PrF UG projects preferences

Note:

2 KB (312 words) - 18:35, November 13, 2008
PrF UG queries

Note:

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PrF UG queries chain queries

Note:

3 KB (601 words) - 18:39, November 13, 2008
PrF UG queries create query

Note: Note:

5 KB (931 words) - 18:40, November 13, 2008
PrF UG queries export results

Note:

1 KB (237 words) - 18:40, November 13, 2008
PrF UG queries query library

Note:

2 KB (259 words) - 18:41, November 13, 2008
PrF UG queries query tab

Note:

2 KB (341 words) - 18:42, November 13, 2008
PrF UG queries search results

Note:

2 KB (276 words) - 18:43, November 13, 2008
PrF UG slots

Note:

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PrF UG slots editing slot properties

Note: Note:

6 KB (1,082 words) - 18:47, November 13, 2008
PrF UG slots inverse slots

Note that if you create an inverse slot relationship

7 KB (1,204 words) - 18:48, November 13, 2008
PrF UG slots make inverse slot

Note that if you create an inverse slot relationship after instances have been c Note:

8 KB (1,266 words) - 18:48, November 13, 2008
PrF UG slots override slot

Note:

5 KB (920 words) - 18:49, November 13, 2008
PrF UG slots slot editor

[[#Note_Icons|Note icons]], which allow you to add notes. === Note Icons ===

16 KB (2,681 words) - 18:51, November 13, 2008
PrF UG slots slot menu

Note that metaclasses and metaslots are advanced features;

3 KB (497 words) - 18:52, November 13, 2008
PrF UG slots superslots pane

Note:

2 KB (351 words) - 18:53, November 13, 2008
PrF UG windows

Note:

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PrF UG windows yellow stickies

{{#var:PrF}} allows you add a note to the Editor for any frame; The buttons for working with a note are located at the top right of the Editor.

4 KB (613 words) - 19:00, November 13, 2008
WebProtege1.0UsersGuide

Note that it is not necessary to log in if you simply wish to view the public on

4 KB (673 words) - 15:15, April 25, 2013
Protege4Pizzas10Minutes

That tutorial is intended to teach you about OWL. This brief note is to show how to use Protégé efficiently. If you want to save this set up, use '''Tabs | Store current layout'''. Note when you quit Protege this is automatically stored and will persist for fut

12 KB (1,828 words) - 20:32, May 23, 2016
PrF UG help

Note:

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PrF UG help user howto

Note:

4 KB (692 words) - 02:09, November 19, 2008
P4AnonymousClasses

...d cause the expression represented by the ADC to be added as a superclass. Note that it will '''not''' be placed under the ADC in the asserted hierarchy, b * deleting $1 removes the above axiom (note that deleting A does not remove the above axiom but obviously changes the m

10 KB (1,719 words) - 21:13, May 23, 2016
Protege4Views

''note to developers: the framelist component is discussed [[P4UiComponentSummary#

17 KB (2,497 words) - 20:56, May 23, 2016
P4MoveAxioms

For more information see the [http://www.w3.org/TR/owl2-profiles/ w3c note on OWL profiles] Note that if you are moving these axioms to another ontology you will end up wit

4 KB (683 words) - 08:32, December 5, 2008
DisplayImages

'''Note! The three widgets for displaying images only work with functional datatype

4 KB (724 words) - 18:57, January 8, 2009
MetaAnalysis

...the ontology is created in OMV and populated with the computed metadata. Note that this feature only works properly if the plugin is run from a java proj

5 KB (801 words) - 18:29, January 27, 2009
SKOS Editor 1.0.3

- Additional asserted and inferred views in the Views menu ( NOTE Some of the views have been re-factored, if you have used a previous versio

758 bytes (114 words) - 10:45, January 6, 2009
How Owl 2.0 Imports Work

The second change to OWL 2.0 imports is the main subject of this note. OWL 2.0 uses an import by location scheme rather than the [[How Owl Import ...d, specifically the xml base, the ontology version and the ontology name. Note that the preferred approach when users are sharing owl ontologies through

9 KB (1,513 words) - 12:44, November 30, 2009
OntologyBeanGenerator 4.0

=== Important Note ===

2 KB (268 words) - 01:19, December 4, 2012
Protege Client Server Tutorial Setup

'''Note. There is a known Java bug in Java 1.6.0_29 and Java 1.7 that affects the s '''Note''' If you don't know whether you have installed Protege with a Java VM incl

17 KB (2,876 words) - 14:04, January 24, 2012
Protege Client Server Tutorial Configuration

...users have access to these projects. It also stores policy configurations. Note that the built-in security concerning which users can access which projects '''IMPORTANT NOTE.''' '''If an operation is not defined in the metaproject, then it is permit

19 KB (3,053 words) - 15:52, March 29, 2011
Protege Client Server Tutorial Advanced

Once you have completed all the steps in the knowledge base article you will note that the service name is still “AutoExNT”. You can adjust this by using Note that in previous versions of Protege the server.delay option was set on the

14 KB (2,183 words) - 11:37, October 1, 2010
Protege Client Server Tutorial Administration

'''NOTE ABOUT SHUTTING DOWN A PROJECT WITH ANNOTATION PROJECT.''' If a project has

11 KB (1,836 words) - 13:04, December 16, 2009
Protege Client Server RMI

'''Please note:''' ''The approach documented here is an advanced technique. My primary pu Note that this example is not as well motivated as the next one but it is a litt

9 KB (1,541 words) - 15:07, August 6, 2009
ConfiguringAntBuildFiles

...installing the core Protege 3 implementation into that directory. Please note that this build script was run on a very slow machine and will run much fas [javacc] Note: UNICODE_INPUT option is specified. Please make sure you create the parser/

29 KB (4,078 words) - 08:07, June 17, 2011
SetUpEclipseForPlugin

'''Note''' If your plug-in depends on other plug-ins (e.g., on the Change Managemen ''Note'': If your plug-in depends on other plug-ins (e.g., protege-OWL plug-in, ch

13 KB (2,123 words) - 14:40, March 31, 2011
ConvertToDBScript

'''Note''' ''You can also make this conversion using the Protege user interface. We

2 KB (280 words) - 15:29, August 7, 2012
Resource Bundles

...le in a standard way using a key and displays whatever value is returned. Note that the program must be specifically written to access strings in this man ...properties file and rename it with the appropriate language/country part. Note that the language code is always lower case, while the country code is alwa

10 KB (1,597 words) - 17:33, May 1, 2009
PluginAnatomy

Note the "singleton:=true" line - this is important since most Protege plugins w ...files out of the OSGi bundles that will be needed to compile the bundle. Note that these jar files are not copied to the class tree because the Protege 4

46 KB (7,155 words) - 23:11, May 23, 2016
WebProtegeEvaluation

...s a guidance, but feel free to expand the knowledge base in any direction. Note that not all the tools will capture all types of information described abov

2 KB (378 words) - 17:22, May 26, 2009
Graph Widget Upgrade from 3.3 to 3.4

...rojects that use the graph widget from Protege 3.3 to Protege 3.4. Please note that this article is '''only applicable to OWL projects'''. If your projec

3 KB (501 words) - 15:30, June 11, 2009
BioPortal Reference Plugin

'''Note''': The new widget will be created under the top widget (it's a bug), so ju

11 KB (1,744 words) - 16:09, May 9, 2014
Troubleshooting Client Server Connections

Note that the exception happens when trying to call Naming.lookup. Usually the Note that the connection is being refused to the host 67.180.198.51. It is impo

16 KB (2,399 words) - 16:48, January 24, 2012
Embedding OSGi

Note the version information, this will be important later. If this entry is re ...OSGi environment explicitly imports the library definitions in conflict. Note the first line from that manifest below:

13 KB (1,986 words) - 14:09, February 16, 2010
WebProtegeReleaseNotes

* Changed the presentation of notes so that note status (resolved or unresolved) is shown on a new line

24 KB (3,670 words) - 12:31, February 14, 2022
Protege41FullBuild

[javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details.

132 KB (19,779 words) - 08:34, December 2, 2009
Protege 3.4.2 Release Notes

...Protege]] now supports the archival of notes and discussion threads. If a note is marked as "Archived", it can then be hidden from the display using the C ...an "archived" check box and a drop-down list for selecting the status of a note. The status can also be set for ontology components or changes.

7 KB (1,099 words) - 17:09, April 27, 2011
DataMaster 1.3.2

'''Note: this and newer versions of the DataMaster plug-in will work only with Prot

2 KB (219 words) - 19:43, December 17, 2009
CompileProtege4InEclipseFromSvn

...hough this is only required if you want to do svn updates using eclipse. Note that there is another similar but different plugin (from Tigris I believe). ''Tortoise svn Users:'' Note that when using Tortoise svn, you need to do a full recursive checkout. I

7 KB (1,221 words) - 11:36, April 24, 2013
ChangeAnalysisTab

'''Please note''', that if your edu.stanford.smi.protegex.changeanalysis directory contain

2 KB (336 words) - 09:33, May 19, 2010
WebProtegeHttpsLogin

...e with the correct path to your keystore, which you generated in step one. Note that this connector is already present in the tomcat server.xml file, but i You are now ready to start Tomcat. Note that on some versions of Unix, you may need to run the Tomcat server as roo

3 KB (431 words) - 12:38, March 21, 2013
CompileProtege4InIntelliJFromSvn

...ll the files you need to compile, but without the IntelliJ configuration. Note that when using Tortoise svn, you need to do a full recursive checkout. I ...created directory. Now the directory location is all ready for IntelliJ. Note that on the mac, double-clicking the metadata.zip file does not do the righ

3 KB (476 words) - 11:41, September 14, 2012
Protege 4.1 Beta Release Notes

Please note that the Manchester OWL Syntax is now discouraged as a format for saving th

12 KB (1,789 words) - 17:24, April 27, 2011
WebProtegeLayoutConfig

'''Note'''. It is possible to store the configuration by clicking on a ''Save Layou '''Note'''. Other properties are available, and we are in the process of documentin

16 KB (2,302 words) - 15:30, February 27, 2014
PropertyFormPortlet

'''Note.''' The list of available widgets will be extended as needed. The name of t

11 KB (1,324 words) - 17:13, November 30, 2016
Protege 5 Development Environment

Note ''mvn package'' will build the main artifact ''target/org.protege.owl.serve

18 KB (2,657 words) - 14:30, April 25, 2017
BuildingSemanticWebApplications

Note that these interfaces and their implementations can be easily generated usi Note that although the implementation classes have constructors, instances of th

20 KB (2,308 words) - 17:14, June 30, 2010
ProgrammingWithProtegeOWL

...ated even if instances are created somewhere else in the user interface. ''Note that after termination, the dialog should also remove the listener from the

19 KB (2,809 words) - 12:54, July 1, 2010
ProtegeOWL API Advanced Topics

Note that the '''OWLModel''' contains many more classes than those returned by t ...ular you can use any Jena-based services such as querying or saving files. Note however, that you currently need to call getOntModel() after each change if

13 KB (1,845 words) - 12:40, February 15, 2011
ProtegeOWL API Advanced Class Definitions

...f 3 for the property. This restriction is overloaded in the subclass to 2 (note that according to the semantics of OWL, subclasses can only narrow restrict Note that in addition to '''owl:maxCardinality''' restrictions, there is another

17 KB (2,042 words) - 16:48, July 2, 2010
ProtegeOWL API Basics

Note that the class '''ProtegeOWL''' provides a couple of convenient static meth

24 KB (3,148 words) - 13:26, November 21, 2010
WebProtegeOpenId

'''Note.''' No private information about your external account (passwords or email ...ider''' (Google, Yahoo etc) from the list at the bottom of the dialog box. Note that there are more options at the bottom right-hand corner of the dialog b

4 KB (584 words) - 21:07, July 15, 2010
WebProtegeNotifications

...changes in properties. Note changes are only made when someone adds a new note or replies to an existing one. The notification delay for each of these can 6. Select your note notification period here. WebProtege will inform you of changes to the note

2 KB (352 words) - 16:31, July 15, 2010
Pr4 UG h2 En Name

Note:

6 KB (1,036 words) - 13:55, July 27, 2010
Pr4 UG mi Introduction

Note: make a note on the appropriate reference page!

4 KB (723 words) - 13:57, July 27, 2010
Pr4 UG mi Outline

Note:

7 KB (980 words) - 13:57, July 27, 2010
Pr4 UG ov Plugins

Note:

3 KB (416 words) - 13:59, July 27, 2010
Pr4 UG rm Edit

Note:

3 KB (473 words) - 12:10, February 25, 2011
Pr4 UG rm File

Note:

3 KB (462 words) - 12:11, February 25, 2011
Pr4 UG rm Reasoner

Note:

2 KB (234 words) - 13:02, February 25, 2011
Pr4 UG rm Refactor

Note: Note that this does not change the URIs of any entities.

3 KB (416 words) - 14:00, July 27, 2010
Pr4 UG rm Window

Note: Note:

8 KB (1,150 words) - 18:01, February 25, 2011
Pr4 UG rp View OPL

Note:

671 bytes (104 words) - 14:06, July 27, 2010
Pr4 UG rt OWLViz

Note:

811 bytes (117 words) - 14:10, July 27, 2010
Pr4 UG rv Cl Supcl hier

Note:

1 KB (211 words) - 14:13, July 27, 2010
Pr4 UG rv Cl Supcl hier inf

Note:

2 KB (341 words) - 14:13, July 27, 2010
Pr4 UG rv In Inds by type

Note:

997 bytes (157 words) - 14:16, July 27, 2010
Pr4 UG rv In Inds by type inf

Note:

914 bytes (149 words) - 14:16, July 27, 2010
Pr4 UG rv On DL metrics

...displayed by a test tab, added to the [[Pr4_UG_ex_Pizza|Pizza Ontology]]. Note that this ontology uses a much larger range of DL features.

1 KB (236 words) - 13:40, January 9, 2012
Pr4 UG ui Main Window

Note:

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Pr4 UG ui Views

Note:

5 KB (775 words) - 14:23, July 27, 2010
Working with firewalls and proxies

As a note to developers, it is possible, though it takes a bit of work, to test proxy

3 KB (409 words) - 12:58, July 12, 2013
Bayesian Network Tab (BNTab) 1.1.3

'''Note for both examples''': Please check if the class names in the project file a

2 KB (307 words) - 05:21, January 24, 2013
Stanford:SettingsXmlExample

| NOTE: This location can be overridden with the CLI option: | NOTE: This location can be overridden with the CLI option:

7 KB (944 words) - 06:03, July 2, 2012
Stanford:Tools

...repository which is the deployment target of all of our projects. Please note that Maven itself uses a repository (the Maven repository).

6 KB (951 words) - 12:21, December 16, 2010
Stanford:AdministratorGuide

Note: the display settings have to be done before selenium is started!

9 KB (1,315 words) - 12:48, December 16, 2010
Stanford:OverviewPage

...repository which is the deployment target of all of our projects. Please note that Maven itself uses a repository (the Maven repository).

9 KB (1,365 words) - 12:47, December 16, 2010
OWL2RDFParserDeclarationRequirement

In this note, I am going to present the argument that an fully OWL 2 compliant parser sh ...he_Structural_Specification second specification] for the purposes of this note.

6 KB (1,014 words) - 12:47, March 2, 2011
POSC 201103 Course Prep

''Please note that we do not provide laptops for participants.'' ...platform independent installer program] to install Protege (recommended), note that we support both 32 and 64-bit operating systems. Please scroll down to

4 KB (641 words) - 13:21, November 7, 2013
BioPortal Import Plugin

Please note that we have also enabled the rendering by the ''Preferred_Name'' property '''Note:''' Notice that the highlighted class in the above example, ''Brain part''

14 KB (2,204 words) - 14:34, June 13, 2014
OWLDocForProtege3

'''Please note:''' this page documents OWLDoc for the Protege 3.x series only. OWLDoc for

566 bytes (85 words) - 16:22, April 25, 2011
Protege-OWL 3 FAQ

...d the files difficult to parse back with an XML parser. It is important to note that Protege uses the [http://www.hpl.hp.com/semweb/jena.htm Jena parser li ...ss to ontologies or structured data that is only available as RDF(S). Also note that the support in Protege for editing RDF should not be confused with the

11 KB (1,879 words) - 18:22, May 20, 2011
Protege Desktop Old Versions

'''If you're interested in downloading Protege Desktop, please note that the most current version is [http://protege.stanford.edu/products.php#

16 KB (1,805 words) - 22:50, March 18, 2019
BeanShell

...t does not work when it is run from a script file. I don't know why yet. Note the use of mngr.getRendering(...) to properly display an axiom. Axiom: 'editor note' label "editor note"@en

32 KB (4,049 words) - 12:59, June 15, 2011
Logical Difference Vizualiser (LogDiffViz)

'''NOTE:'''

4 KB (639 words) - 13:19, March 21, 2013
Protege 4.2 Alpha Release Notes

...on 4.0.1). Previous versions were problematic for Java 7 users. ''Please note that we don't officially support Java 7 yet.''

2 KB (354 words) - 13:28, March 14, 2012
SOVA 0.7.6

NOTE: You still need to select it beforehand in Protege-OWL menu and start the R

518 bytes (67 words) - 18:14, March 18, 2012
POSC 201203 Course Prep

''Please note that we do not provide laptops for participants.'' ...platform independent installer program] to install Protege (recommended), note that we support both 32 and 64-bit operating systems. Please scroll down to

4 KB (642 words) - 13:20, November 7, 2013
Protege 4.2 Beta Release Notes

...ger requires administrative privileges to run on Windows machines. Please note the exception that downloading new plug-ins will still require Protege to b

7 KB (995 words) - 17:19, November 13, 2012
POSC 201205 Course Prep

''Please note that we do not provide laptops for participants.'' ...platform independent installer program] to install Protege (recommended), note that we support both 32 and 64-bit operating systems. Please scroll down to

3 KB (445 words) - 13:20, November 7, 2013
RacerProTG

Please note that the RacerProTG software downloaded by the Protégé Plugin is not iden

4 KB (619 words) - 12:31, April 21, 2014
Protege4ClientServer

Note that Windows systems come with there own version of java but that we have h Once these fields are filled in the server can be installed. Note again that the server can be uninstalled without filling in any of these fi

24 KB (4,034 words) - 17:07, March 11, 2015
POSC 201303 Course Prep

''Please note that we do not provide laptops for participants.'' '''Note to Mac users:''' You must have Mac OS X 10.4 or higher to use Protege.

3 KB (515 words) - 13:20, November 7, 2013
WebProtegeCompiling

'''Note. If you have troubles starting the dev mode on Mac OSX, then use the [http:

10 KB (1,475 words) - 18:13, April 25, 2013
P4 2 Release Announcement

'''Note to users of Mac OS X 10.7.5 and above:''' The default [http://support.apple ...on 4.0.1). Previous versions were problematic for Java 7 users. ''Please note that we don't officially support Java 7 yet.''

8 KB (1,242 words) - 10:05, March 18, 2013
POSC 201309 Course Prep

''Please note that we do not provide laptops for participants.'' '''Note to Mac users:''' You must have Mac OS X 10.4 or higher to use Protege Deskt

4 KB (634 words) - 13:19, November 7, 2013
Protege 3.5 Release Notes

'''Note to all users:''' Protege 3.5 requires [http://www.oracle.com/technetwork/ja '''Note to users of Mac OS X 10.7.5 and above:''' The default [http://support.apple

5 KB (680 words) - 16:48, March 5, 2014
WebProtege1.0AdminGuide

Please note that this step is optional and only needs to be performed when you want use ...he metaproject.pprj file located in the examples/server directory. Please note that you must use a version of the Protégé application that is compatible

25 KB (3,879 words) - 18:13, April 25, 2013
Testing Firewalls and Web Proxies

''Note: it should be possible to simplify this example considerably. The entire s

8 KB (1,380 words) - 15:41, July 12, 2013
CompileProtege5InEclipseWithMaven

Please note that at the time this guide was written, Protege is using version 3.4.5 of ===== Note on some other errors (*) =====

20 KB (3,174 words) - 02:23, December 4, 2015
Quick start for Protege Plugin with maven

Note that if you are prompted for a password, it might mean that you mispelled t

3 KB (494 words) - 12:19, September 1, 2013
PSC 201403 Course Prep

''Please note that we do not provide laptops for participants.'' Please note that the default [http://support.apple.com/kb/ht5290 Gatekeeper] settings f

4 KB (545 words) - 15:06, March 10, 2014
ProtegeProject FAQ

.../mailman/listinfo/protege-user protege-user support mailing list]. Please note that you must subscribed to the list before you can post messages. Alterna

5 KB (755 words) - 18:30, January 28, 2014
Protege3JDBCSchema

'''Note'''

7 KB (1,096 words) - 12:13, March 25, 2014
VOWL

Note that the ProtégéVOWL does not implement all visual elements defined in th

1,003 bytes (132 words) - 10:45, November 12, 2016
MappingOntology

Note two things: Note well: PYTHON means Jython. Latest version of Jython, as of this writing, is

7 KB (1,133 words) - 14:09, June 24, 2014
ConfiguringPromptProjects

...hat you use. Below is the summary of how to specify the source ontologies. Note that in most modes you can specify auxiliary files, for example, the saved

1 KB (235 words) - 14:11, June 24, 2014
SavingMappings

...Save", an additional project is created <your project name>-mappings.pprj. Note that if you are starting from a new, blank ontology, you should save it *be

1 KB (225 words) - 14:09, June 24, 2014
Install Protege5 PlatformIndep

'''Note''': You may need to adjust the java path in the run script.

4 KB (594 words) - 15:48, May 24, 2016

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