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  • Protege Ontology Library
    === The Protege Ontology Library is no longer being maintained. For biomedical ontologies, please vi
    286 bytes (40 words) - 11:40, February 14, 2022
  • Sub Ontology Tab
    ...the concepts in your target ontology retain the metadata from the original ontology.<br /><br />
    1,016 bytes (151 words) - 12:44, April 23, 2008
  • Sub Ontology Tab 1.0.3
    |VersionOf=Sub Ontology Tab
    267 bytes (31 words) - 18:40, August 12, 2008
  • Sub Ontology Tab 1.0
    #REDIRECT [[Sub Ontology Tab 1.0.0]]
    36 bytes (4 words) - 08:56, April 12, 2008
  • Sub Ontology Tab 1.0.0
    #REDIRECT [[Sub Ontology Tab 1.0.3]]
    36 bytes (4 words) - 11:02, April 16, 2008
  • Workflow ontology
    = The Workflow ontology = ...tion of the <code>Workflow</code> class (or subclass) in the ontology. The ontology captures the structure of the workflow - using classes, and a specific work
    3 KB (358 words) - 15:36, May 3, 2010
  • Pr4 UG co Ontology
    == Ontology == An [[{{#var:G}}Ontology|ontology]] is a formally-defined vocabulary
    2 KB (328 words) - 13:55, July 27, 2010
  • Pr4 UG rt Active Ontology
    == Active Ontology Tab == The Active Ontology [[{{#var:G}}Tab|tab]]
    1 KB (175 words) - 14:08, July 27, 2010
  • Pr4 UG rv On Ontology metrics
    == Ontology - Ontology Metrics == for an [[{{#var:G}}Ontology|ontology]].
    902 bytes (135 words) - 14:21, July 27, 2010
  • Ontology Generation Plugin (DOG4DAG)
    |Description=The ontology generation plug-in includes ...ed terms to existing ontologies using the BioPortal Web Service or the EBI Ontology Lookup Service
    1 KB (129 words) - 05:14, December 2, 2011
  • Ontology Generation Plugin (DOG4DAG) 3.3.0
    |VersionOf=Ontology Generation Plugin (DOG4DAG) |Changelog=Added support for BioPortal ontology lookup services
    305 bytes (38 words) - 07:03, July 26, 2011
  • Ontology Generation Plugin (DOG4DAG) 3.4.0
    |VersionOf=Ontology Generation Plugin (DOG4DAG)
    467 bytes (71 words) - 06:25, November 8, 2011
  • Ontology Generation Plugin (DOG4DAG) 3.4.1
    |VersionOf=Ontology Generation Plugin (DOG4DAG) |Changelog=Bugfix: Switching between BioPortal and EBI OLS for ontology lookup
    355 bytes (43 words) - 05:16, December 2, 2011
  • Ontology Evaluation
    |Description=A tab widget plug-in for ontology evaluation from a set of criteria. |HomepageURL=http://code.google.com/p/ontology-evaluation/
    503 bytes (58 words) - 09:00, July 31, 2013
  • Ontology Evaluation 4.1
    |VersionOf=Ontology Evaluation |File=https://ontology-evaluation.googlecode.com/files/evaluation4.1.zip
    233 bytes (23 words) - 16:08, April 23, 2013
  • Ontology Evaluation 3.4
    |VersionOf=Ontology Evaluation |File=https://ontology-evaluation.googlecode.com/files/evaluation3.4.zip
    235 bytes (23 words) - 16:09, April 23, 2013

Page text matches

  • Main Page
    ...:bold;">[[WebProtege|WebProt&eacute;g&eacute;]] - a powerful collaborative ontology development environment for the Web </span>]] ...[[Protege4UserDocs|Prot&eacute;g&eacute; Desktop]] - a fully-fledged OWL 2 ontology editor for the desktops</span>]]
    5 KB (687 words) - 23:55, February 17, 2022
  • Protege5DevDocs
    The [[P4APIOverview|Protege API]] gives access to the ontology model and offers various utilities. ...5_Development_Environment|Setting up a development environment for the OWL Ontology Server]]
    4 KB (546 words) - 23:19, May 23, 2016
  • PROMPT
    ...rate ontologies to create a single coherent ontology, extract a part of an ontology, and move frames from an included to an including project. * '''compare''' versions of the same ontology
    5 KB (754 words) - 15:30, July 23, 2014
  • OntoViz
    * Picking a set of classes or instances to visualize part of an ontology To create a graph, select a class from your ontology in the Classes pane, click the "add class" button in the upper left "Config
    10 KB (1,576 words) - 08:51, July 19, 2017
  • OWLViz
    |Description=Enables class hierarchies in an OWL ontology to be viewed and incrementally navigated, allowing comparison of the assert ...otege-owl.html Protege-OWL editor]. It enables class hierarchies in an OWL Ontology to be viewed and incrementally navigated, allowing comparison of the assert
    4 KB (654 words) - 15:46, March 29, 2019
  • ELK 0.4.0
    If performing reasoning tasks after small ontology modifications,
    1 KB (182 words) - 09:26, January 14, 2016
  • DataMaster
    ...lug-in might be to import a database schema as classes or instances in the ontology which may be later used to dynamically query the content of the database us
    4 KB (576 words) - 01:38, July 11, 2014
  • XML Tab
    = Exporting an ontology to XML = = Importing instances from XML into an ontology =
    4 KB (565 words) - 13:58, February 14, 2014
  • Algernon
    ...including rule definition, slot value set, get and delete, frame deletion, ontology traversal, and more. It allows nearly complete access to the Protege API, a
    2 KB (224 words) - 12:44, September 14, 2007
  • Protege Ontology Library
    === The Protege Ontology Library is no longer being maintained. For biomedical ontologies, please vi
    286 bytes (40 words) - 11:40, February 14, 2022
  • Collaborative Protege
    ...ive ontology editing as well as annotation of both ontology components and ontology changes. ..."color:#555555;font-weight:bold;">The format of the Changes and Annotation ontology (ChAO) has changed in Protege 3.4.2 release. If have an existing ChAO proje
    24 KB (3,748 words) - 13:05, February 12, 2011
  • OBOConverter
    |Description=A tab plugin that converts OBO format ontology files into OWL files using the OBO-to-OWL mapping created by NCBO.
    1 KB (141 words) - 12:43, February 24, 2009
  • The CO-ODE Project
    ...CO-ODE project aims to build authoring tools and infrastructure that make ontology engineering easier.
    206 bytes (28 words) - 14:12, August 16, 2007
  • Protege-Frames
    ...ontology101.html Ontology Development 101] guide to building a frame-based ontology
    1 KB (166 words) - 17:21, March 16, 2012
  • Protege-OWL
    ...he Protege-OWL editor is an extension of [[Protege]] that supports the Web Ontology Language (OWL).
    1 KB (162 words) - 15:42, August 8, 2017
  • Protege3UserDocs
    * [[Collaborative_Protege|Collaborative Protege]] - support for collaborative ontology development; adding notes to classes, change tracking, chat, etc. ...Tab|Change tracking]] - track and record the changes the users make in the ontology
    4 KB (472 words) - 14:04, May 23, 2016
  • Protege Client-Server Tutorial
    ...able for projects in which multiple users need to access and edit the same ontology.''' ...able for projects in which multiple users need to access and edit the same ontology.
    5 KB (745 words) - 14:05, January 24, 2012
  • Changes Tab
    = How to store the Changes and Annotations ontology in a database = If you have an existing changes and annotation ontology (ChAO) associated to your project, then it is probably stored as RDF(S) fil
    7 KB (1,066 words) - 14:11, December 16, 2009
  • UMLS Tab
    ...searching the UMLS from within Protege, and directly annotating a Protege ontology with information from the UMLS. New instances and classes can be created i * Directly annotating an ontology in Protege with information from the remote knowledge base
    11 KB (1,843 words) - 16:42, November 5, 2008
  • ProtegeUserDocs
    == Ontology Development == .../ontology101.html Ontology Development 101: A Guide to creating your first ontology]
    904 bytes (120 words) - 14:26, October 4, 2013
  • ProtegeDesktopUserDocs
    * [[Importing_Ontologies_in_P41|OWL Imports]] - modular ontology support in OWL and Protege * [[Protege4OWLDiff|Protege OWL Diff]] - compare two versions of an ontology
    4 KB (564 words) - 15:19, December 22, 2021
  • Protege4GettingStarted
    This page contains instructions for getting started with the Protege Desktop Ontology Editor. Applies to versions 4, 5 and newer. Protege is an OWL ontology development environment. This quick start guide forms part of the [[Protege
    10 KB (1,586 words) - 20:25, May 23, 2016
  • Protege4Migration
    For ontology developers the choice is harder as the tasks that any given user/applicatio ...yle="border-bottom:1px dashed #BC8F8F;" | Multiple users can edit the same ontology using the [[Protege_Client-Server_Tutorial|client-server version of Protege
    8 KB (1,229 words) - 14:25, August 8, 2017
  • Considerations on porting Tab Plugins to Client-Server mode
    This plugin monitors changes made to an ontology and displays a summary of the changes in a nice way to the user. When we ...d not function correclty. The knowledge base listeners that monitored the ontology for changes ran on each of the clients.
    3 KB (442 words) - 11:50, March 19, 2010
  • Protege3DevDocs
    ** [[ImportUsingProtegeOWLAPI|How to import an ontology using the Protege-OWL API]] ** [[LoadOWLOntologyFromDB|How to load a Protege-OWL ontology from a Protege database using the API]]
    4 KB (537 words) - 23:07, May 23, 2016
  • OWLDoc
    ...s, property, or individual will be displayed as you browse. Updates to the ontology are reflected immediately. ...emented as a standalone [http://www.co-ode.org/downloads/owldoc-server web ontology browser].<br /><br />
    2 KB (247 words) - 11:25, May 8, 2012
  • Matrix
    |Description=Several spreadsheet-style views of an ontology, including existential fillers, individual relationships, and an object pro The Matrix tab/views plug-ins provide several spreadsheet-style views of an ontology, including existential fillers, individual relationships, and an object pro
    1 KB (162 words) - 17:08, March 4, 2010
  • Cloud Views
    |Description=Visualize your ontology as a tag cloud (a set of related tags with corresponding weights). ...agcloud.com/ TagCloud] can give you insight into different aspects of your ontology. Ratings are based on different criteria (e.g., class usage, depth in the
    1 KB (170 words) - 17:04, March 4, 2010
  • Bookmarks
    ...easy accessible at anytime. Your bookmarks will be saved along with your ontology annotations for future reference.
    983 bytes (136 words) - 11:27, May 8, 2012
  • ProtegeReasonerAPI
    It provides methods for consistency checking, classification, etc. of an ontology as well as methods for getting the inferred information for a particular OW The examples on this page use an ontology that describes pizzas, which can be downloaded from [http://www.co-ode.org/
    11 KB (1,483 words) - 18:37, November 30, 2009
  • Protege4Shortcuts
    | Create a new ontology into the current or new workspace | Open an ontology (and its imports) from a file into the current or new workspace
    11 KB (1,577 words) - 20:58, May 23, 2016
  • Protege4Features
    * Multiple alternative views of the same ontology * UI hints for showing in which ontology statements are made
    3 KB (318 words) - 20:47, May 23, 2016
  • ConvertingToDatabaseProject
    ...ry large ontologies that cannot be loaded in memory. This method dumps the ontology directly in the database without loading it completely in memory.
    6 KB (697 words) - 17:31, April 10, 2009
  • ProgramaticLuceneQueryAccess
    * generate phonetic lucene indicies for an ontology The first few lines just illustrate one of the standard ways of opening an ontology in Protege. This test code was set up to work with the pizza project but i
    4 KB (528 words) - 06:59, October 2, 2009
  • OntoBase
    OntoBase automatically generates ontology grounded in database (by means of Protégé API using frames and facets). U At this point Protege project will contain "ground" ontology generated by OntoBase with four top level classes:
    4 KB (671 words) - 08:21, March 2, 2011
  • TerMine Plugin
    ...ext and provides an interface for rapidly bringing these terms into an OWL ontology. ...ext and provides an interface for rapidly bringing these terms into an OWL ontology. The plugin accesses TerMine via a Web Service over the Internet. Use is cu
    10 KB (1,645 words) - 19:01, March 18, 2008
  • LoadFramesOntologyFromDB
    ...n style="font-weight:bold; font-size:18px;">How do I load a Protege-Frames ontology from a Protege database using the API?</span><br /><br /> The simplest way to load a Protege-Frames ontology from a database is to programatically load the project file (.pprj), which
    1 KB (176 words) - 17:54, February 22, 2008
  • LoadOWLOntologyFromDB
    <span style="font-weight:bold; font-size:18px;">How do I load a Protege-OWL ontology from a Protege database using the API?</span><br /><br /> The simplest way to load a Protege-OWL ontology from a Protege database is to programatically load the project file (.pprj)
    1 KB (181 words) - 05:03, May 1, 2010
  • UseOWLClassesPanel
    '''Note''': If you loaded the OWL ontology by using the <code>Project</code> methods (e.g. <code>Project.load(String p If you load the OWL ontology by using the <code>ProtegeOWL</code> methods (e.g. <code>ProtegeOWL.createJ
    3 KB (365 words) - 16:07, May 27, 2008
  • Graph Widget Tutorial OWL
    For each class in your ontology, Protege-OWL generates a default form that can be used to enter data for in == Download example ontology ==
    13 KB (2,132 words) - 20:17, March 22, 2008
  • DLQueryTab
    ...tab provides a powerful and easy-to-use feature for searching a classified ontology. It comes with the standard distribution of Protégé Desktop (versions 4, You can only execute a query on a classified ontology. Before attempting to execute a query, run a classifier:
    5 KB (836 words) - 21:15, May 23, 2016
  • Sub Ontology Tab
    ...the concepts in your target ontology retain the metadata from the original ontology.<br /><br />
    1,016 bytes (151 words) - 12:44, April 23, 2008
  • Sub Ontology Tab 1.0.3
    |VersionOf=Sub Ontology Tab
    267 bytes (31 words) - 18:40, August 12, 2008
  • Sub Ontology Tab 1.0
    #REDIRECT [[Sub Ontology Tab 1.0.0]]
    36 bytes (4 words) - 08:56, April 12, 2008
  • WebProtegeDeveloperHowTo
    ...tege detects user names, passwords, and lists of available projects via an ontology (the Protege Metaproject).
    9 KB (1,294 words) - 18:14, April 25, 2013
  • Sub Ontology Tab 1.0.0
    #REDIRECT [[Sub Ontology Tab 1.0.3]]
    36 bytes (4 words) - 11:02, April 16, 2008
  • Using Reasoners
    === Classifying the ontology with the DIG reasoner === Now you are ready to test the reasoner connection and to classify the ontology.
    8 KB (1,243 words) - 19:25, April 18, 2008
  • Working with the Database Backend in OWL
    == Opening an ontology using a web uri == ...e backend project. We will use the [http://proton.semanticweb.org proton] ontology as an example because it has a few non-trivial imports. The first step is
    9 KB (1,440 words) - 13:15, January 20, 2010
  • SetBrowserSlotPattern
    ...you may want to display the classes, properties and/or individuals in your ontology using the value of rdfs:label or some other property, rather than using the ...ge''' for rdfs:label, then you have to set the default language of the top ontology. This is done by setting the value of the property <code>protege:defaultLan
    3 KB (477 words) - 16:06, May 27, 2008
  • How Owl Imports Work
    ...use of names for OWL ontologies is to make the name be the location of the ontology on the Web, but this is outside of this formal treatment.)'' ...s declared'' to be of type owl:Ontology. So for instance in the pizza owl ontology, the declaration in question is the following:
    14 KB (2,405 words) - 11:44, July 25, 2011
  • Protege Web Browser
    ...his is to try and open your ontology with Protege. If Protege can open the ontology without errors, the Protege Web Browser should succeed in opening the proje
    7 KB (1,166 words) - 12:16, October 23, 2008
  • Outline and Existential Tree Views
    The subsumption hierarchy is not the only "axis" on which an ontology relies. Many other axis (such as partOf) can be useful for navigation.
    969 bytes (129 words) - 18:12, April 28, 2011
  • ImportUsingProtegeOWLAPI
    '''Question: How do I import an ontology using the Protege OWL API?''' //if you want to use a custom prefix for the namespace of the imported ontology, uncomment the following line
    919 bytes (114 words) - 15:57, May 27, 2008
  • Engineering ontologies
    * '''The Components ontology''' – defines the part-whole relationship and is used to represent the dec * '''The Connections ontology''' – defines the topology of a system and describes how components of a s
    2 KB (261 words) - 09:32, June 3, 2016
  • HidingIdentifiers
    # In the OWL menu, select "Preferences" and then "Import Protege metadata ontology" # In the Metadata tab, make sure the primary ontology (the top one) is active and selected
    5 KB (763 words) - 17:50, June 20, 2008
  • DataMaster 1.3.1
    ...ted in a separate ontology (which, on its turn, is imported in the current ontology)
    1 KB (204 words) - 19:17, December 17, 2009
  • XlSQL-Y8
    ...This driver can be used with DataMaster to import concepts into a Protege ontology from appropriately formatted Excel spreadsheets, as if they were tables in
    4 KB (548 words) - 15:13, March 15, 2009
  • EZPal
    The tab makes use of a Protege ontology to store three major categories of information EZPal presents in the interf
    3 KB (395 words) - 14:52, July 8, 2008
  • PSM Librarian
    ...htmost panel displays the mapping knowledge base: At the top, the mappings ontology and existing instances of mapping relations; below, the contents of the sel
    5 KB (741 words) - 17:52, July 21, 2008
  • ReadOnlyForms
    ...om a class form read-only by using the API. The example uses the Newspaper ontology - it will show the form for "Destination Mars" instance of class "Article"
    936 bytes (126 words) - 18:45, July 8, 2008
  • PluginTypes
    <label value="Active Ontology"/> An EditorKit is the access point for a particular type of model (or ontology) and a GUI to handle that model.
    10 KB (1,310 words) - 23:09, May 23, 2016
  • OntologyBeanGenerator
    ...lugin is a Protégé Tab widget which generates java files representing an ontology that can be used with the JADE environment. With the beangenerator tool you * Include/import JADE Abstract Ontology.
    5 KB (704 words) - 13:15, October 17, 2016
  • PromptViz
    ...eates visual representations of the differences between two versions of an ontology.
    620 bytes (69 words) - 14:58, July 24, 2008
  • Protege4NamingAndRendering
    This page describes the various options for naming entities in an ontology for Protege 4, 5 and newer. eg The Pizza class in the pizza ontology is identified by its URI (http://www.co-ode.org/ontologies/pizza/pizza.owl#
    9 KB (1,451 words) - 21:03, May 23, 2016
  • OPL Plugin
    ...o work within Protege 4.x to test what further requirements are needed for ontology transforms.
    618 bytes (77 words) - 06:22, November 14, 2008
  • Protege4Contributing
    * Choose a name for the page that discusses the new plugin (e.g. "Sub Ontology Tab"). ...hp/Category:Person Person Category] lists the people who are known to this ontology.
    5 KB (823 words) - 23:10, May 23, 2016
  • EnablingDoubleClick
    <string>OWL Ontology</string>
    1 KB (167 words) - 17:41, September 30, 2008
  • Protege-OWL 4 FAQ
    ...How do I change the name of an entity (class, property, individual) in my ontology? === === Why does my ontology contain classes named Error1, Error2, ...? ===
    6 KB (893 words) - 16:50, February 17, 2022
  • PrF UG classes class editor
    These notes, which are not part of your ontology, These notes are part of your ontology.
    4 KB (633 words) - 17:22, November 13, 2008
  • PrF UG classes editing a class
    These notes, which are not part of your ontology,
    6 KB (989 words) - 17:31, November 13, 2008
  • PrF UG files database backend
    You can save the ontology-related information for a {{#var:PrF}} project
    5 KB (779 words) - 18:45, March 5, 2009
  • PrF UG files owl support
    in the [http://www.w3.org/2001/sw/WebOnt W3C's Web Ontology Language (OWL)]. "An OWL ontology may include descriptions
    4 KB (634 words) - 17:46, November 13, 2008
  • PrF UG files project types
    Information about the project ontology determines how the project ontology and instances are stored.
    2 KB (405 words) - 17:47, November 13, 2008
  • PrF UG files protege files
    You can save the ontology-related information for a {{#var:PrF}} project these files contain further information about the ontology and instances of the project.
    4 KB (584 words) - 17:47, November 13, 2008
  • PrF UG files xml support
    which contains XML-encoded ontology information for the knowledge base\
    2 KB (374 words) - 17:48, November 13, 2008
  • PrF UG forms understanding forms
    Once you have built the classes and slots of your ontology, In {{#var:PrF}}, the expectation is that ontology creation and instance entry
    3 KB (566 words) - 17:59, November 13, 2008
  • PrF UG glossary
    === Ontology === In {{#var:PrF}}, an ontology is represented as a set of classes with their associated slots.
    6 KB (936 words) - 14:45, November 14, 2008
  • PrF UG intro planning a project
    Developers should not expect to "complete" ontology development Build an initial small ontology of [[PrF_UG_classes|classes]]
    4 KB (643 words) - 18:19, November 13, 2008
  • PrF UG intro what is protege
    An ontology describes the concepts and relationships Several applications can use the same domain ontology to solve different problems,
    3 KB (486 words) - 18:20, November 13, 2008
  • PrF UG intro what is protege frames
    In this model, an ontology consists of: (e.g., for ontology management, ontology visualization, inference and reasoning, etc.)
    2 KB (286 words) - 15:08, March 8, 2010
  • PrF UG projects import project
    based on files which contain your ontology information in one of the supported formats.
    1 KB (251 words) - 18:32, November 13, 2008
  • PrF UG slots inverse slots
    Once you have identified the relationship in your ontology, If the information is important in your ontology,
    7 KB (1,204 words) - 18:48, November 13, 2008
  • PrF UG slots slot editor
    These notes, which are not part of your ontology,
    16 KB (2,681 words) - 18:51, November 13, 2008
  • PrF UG windows yellow stickies
    These notes, which are not part of the ontology structure,
    4 KB (613 words) - 19:00, November 13, 2008
  • ChAO API
    ...tege|Collaborative Protege]] extension: e.g., tracking changes, annotating ontology components (classes, properties, etc.) or changes (creation of a class). Th ..._in_collaborative_environments paper describing the Changes and Annotation ontology].
    8 KB (1,022 words) - 17:57, October 24, 2008
  • WebProtege1.0UsersGuide
    '''WebProtégé''' is an open source, lightweight, web-based ontology editor. ...ting. Simply click on an ontology name in the ''Name'' column to open the ontology. You will only see the ontologies to which your user has access to. If you
    4 KB (673 words) - 15:15, April 25, 2013
  • WebProtegeUsersGuide
    '''WebProtégé''' is an open source, lightweight, web-based ontology editor. ...t for linking to BioPortal is available on the [http://www.bioontology.org/ontology-editing-and-publishing-using-webprotege-and-bioportal NCBO Webinar webpage]
    8 KB (1,250 words) - 14:46, February 9, 2022
  • Protege4RenameEntities
    * Try typing in the '''find''' box. All entity URIs in the ontology will be searched for the text entered in here.
    1 KB (214 words) - 08:48, November 7, 2008
  • Protege4Pizzas10Minutes
    ...most of them. This is a quick trip through how to build our standard Pizza ontology in 10 minutes or less of actual typing. ...lready know what you are doing and have a list of the main elements of the ontology written down in pencil or sketched in a text editor, mind-map, concept map
    12 KB (1,828 words) - 20:32, May 23, 2016
  • P4AnonymousClasses
    ...g arbitrary expressions, perhaps for testing purposes, or just to make the ontology more clear. This is the reason the [[DLQueryTab|DL query tab]] is so useful P4 now allows ACs to be added to the ontology in such a way that they can be saved and browsed just like ordinary classes
    10 KB (1,719 words) - 21:13, May 23, 2016
  • Protege4Views
    ...in a frame list will generally represent a single statement(axiom) in the ontology. * '''Remove X''' delete this statement from the ontology
    17 KB (2,497 words) - 20:56, May 23, 2016
  • Protege4ExpressionEditor
    ...candidate entities or ensure the correct spelling of a named thing in the ontology, an autocomplete feature has been implemented.
    4 KB (586 words) - 21:12, May 23, 2016
  • P4MoveAxioms
    ...f axioms can be extracted from an ontology and optionally moved to another ontology. Selection can be made by several different algorithms. ** '''Select ontology''' choose which of the loaded ontologies you wish to move axioms from
    4 KB (683 words) - 08:32, December 5, 2008
  • DisplayImages
    = Display images in the ontology = We will use as an example the Pizza ontology: we will add a property to class "Country" that will contain the path to an
    4 KB (724 words) - 18:57, January 8, 2009
  • MetaAnalysis
    ...metadata for ontologies and facilitates the export of that metadata to the Ontology Medata Vocabulary. ...owl panel, and the extras panel. The plugin computes metadata for a given ontology and displays in these panels. Two of the panels, the owl panel and the ext
    5 KB (801 words) - 18:29, January 27, 2009
  • How Owl 2.0 Imports Work
    * added support for versions of an ontology ...is not null, this will mean that the ontology is a specific version of the ontology.
    9 KB (1,513 words) - 12:44, November 30, 2009
  • ACE View
    |Description=ACE View is an ontology and rule editor that uses Attempto Controlled English (ACE) in order to cre
    441 bytes (57 words) - 17:29, March 16, 2012
  • OntologyBeanGenerator 4.0
    ...erated Java classes corresponding to existing instances/individuals in the ontology. This is very useful when creating messages with complex content.
    2 KB (268 words) - 01:19, December 4, 2012
  • Protege Client Server Tutorial Setup
    ...rather than database mode, then you will loose all the changes made to the ontology from the last save until the kill operation.
    17 KB (2,876 words) - 14:04, January 24, 2012
  • Protege Client Server Tutorial Configuration
    ...spend some time browsing the class hierarchy. You will find a very simple ontology of users, security, and projects: The policy model represented by the metaproject ontology is very simple and flexible. The idea is that you can attach to a policy co
    19 KB (3,053 words) - 15:52, March 29, 2011
  • Protege Client Server Tutorial Advanced
    ...he server will cache information about certain frames from the server side ontology while the client initializes. For example, if the client adds the system pr
    14 KB (2,183 words) - 11:37, October 1, 2010
  • Protege Client Server Tutorial Administration
    ...er is in a transaction, other Protege clients are not able to write to the ontology. The Users table also shows the server backlog - the number of requests the
    11 KB (1,836 words) - 13:04, December 16, 2009
  • CollabProtege Tutorial 2009 Conference
    = Collaborative Ontology Development with Protege = ...otege rich application, or in [[WebProtege]] - a web-based and lightweight ontology editor.
    4 KB (559 words) - 22:54, March 12, 2009
  • Resource Bundles
    ...s, labels, and dialog titles. This is '''not''' a mechanism for authoring ontology and knowledge-base content in multiple languages simultaneously. Such suppo
    10 KB (1,597 words) - 17:33, May 1, 2009
  • OWL2UML
    ...lly generates UML diagram which represents active OWL ontology using OMG's Ontology Definition Metamodel.
    479 bytes (61 words) - 02:54, May 21, 2010
  • P4UiComponentSummary
    example: '''org.protege.editor.owl.ui.ontology.wizard.create.CreateOntologyWizard''' An editor with a built in file selection dialog (as used by Open ontology dialogs etc)
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  • PluginAnatomy
    .... The purpose of a Protege view is to provide a view of some aspect of an ontology. In the Protege interface, a Protege view is easily recognized. It has a ..."Example View Component". If you click on the View menu and then select "Ontology Views" you will see the "Example View Component" listed there. However on
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  • WebProtegeEvaluation
    Your task will be to extend an existing ontology in WebProtege and to provide feedback about your experience,.
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  • P4 Release Announcement
    While Protege 4.0 was under development, the OWL 2 ontology language has been moving through the W3C recommendation process. This proce ...he first tools to support OWL 2. Our intent is to provide a well designed ontology editor
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  • EasyDB
    ...which can be used to quickly asses relationships between instances in the ontology. The ontology is stored using the Jena database storage schema. This was selected for its
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  • P4APIOverview
    ...e are imports or otherwise). There needs to be some way to determine which ontology edits are performed on by default. It is reasonable that the user might wan ...space. By convention all new additions to the model are made in the active ontology.
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  • P4 1PortingGuide
    * The changes API has been extended to support ontology name, annotation and import changes
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  • Owl2Cool
    ...t which provides an interface to Protege users for transorming a given OWL ontology to the object-oriented language COOL. After the transformation it produces ...ject oriented languge of CLIPS named COOL in a class hierarchy made in OWL ontology.
    1 KB (163 words) - 03:16, July 8, 2009
  • BioPortal Reference Plugin
    ...cription=The BioPortal Reference Plugin allows the user to insert into the ontology references to external ontologies and terminologies stored in BioPortal. ...'''easy navigation''' from the domain ontology in Protege to the external ontology by simply clicking on the generated '''hyperlink of a reference'''. The hyp
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  • WebProtegeDevelopersGuide GWT 1 5
    ...You modify this information in the "metaproject", which is a frame-based ontology that models permissions (a more [[Protege_Client-Server_Tutorial#The_Metapr
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  • Axiomé
    ...ntly displayed to show a tree-table representation of the SWRL rules in an ontology. This tree-table enables users to explore the rule base and launch any of f
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  • WebProtegeReleaseNotes
    * '''Ontology Id''' portlet - displays the id of the project root ontology (currently read only) * '''Ontology Annotations''' - displays the annotations for the project root ontology
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  • ProtegeDocgen
    ...for (frame-based) Protege provides a quick export of all the content of an ontology (classes, instances and documentation) in various formats (html, pdf, fo... ...n plugin for Protege provides a quick export of all the content of a frame ontology (classes, instances and documentation) in various formats (html, pdf, fo...
    2 KB (307 words) - 08:34, October 14, 2009
  • Protege 4.0.1 Release Notes
    ...output format (e.g., OWL/XML, OWL Functional Syntax, etc.) when saving an ontology. Protege 4.0.1 only supports the RDF/XML format. The reason for this chan ...reload option if Protege encounters a syntax error while trying to load an ontology. This allows users to attempt to correct the problem and try again.
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  • HermiT
    ...Language (OWL). Given an OWL file, HermiT can determine whether or not the ontology is consistent, identify subsumption relationships between classes, and much
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  • Protege41FullBuild
    A org.protege.editor.owl/src/org/protege/editor/owl/model/refactor/ontology A org.protege.editor.owl/src/org/protege/editor/owl/model/refactor/ontology/OntologyMigrator.java
    132 KB (19,779 words) - 08:34, December 2, 2009
  • Protege 4.0.2 Release Notes
    * Fixed a bug that prevented Protege from starting if an ontology with a bad URI was in the "Open recent" ontologies list. ...ing large ontologies, e.g., the [http://www.opencyc.org/downloads OpenCyc] ontology.
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  • Protege 3.4.2 Release Notes
    * Corrected a problem where the name of an ontology was determined by calculating the xml:base, which is not compatible with th ==== Modifications to the Changes & Annotation Ontology (ChAO) ====
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  • DataMaster 1.3.2
    ...id ClassCastException when importing data from a database into an imported ontology that has non Jena back-end, for example it has a database back-end.
    2 KB (219 words) - 19:43, December 17, 2009
  • Importing Ontologies in P41
    In this section, I will walk you through adding an import to an ontology. The purpose of this page is to illustrate OWL 2.0 imports and explain the ...logy. Here is a simplification of the ontology declaration from the pizza ontology:
    19 KB (3,050 words) - 21:22, May 23, 2016
  • OLS2OWL
    OLS2OWL, an ontology repository manager plug-in developed for Protégé 4.0. The tool (1) facili
    1 KB (200 words) - 08:30, January 8, 2010
  • OntoBase 3.3.5
    -Automatic synchronization of ontology with source databases upon loading of the project;
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  • OBO Tools
    |Description=A set of Protege extensions that make it easier for OBO ontology developers to navigate and edit OBO ontologies in OWL.
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  • HermiT 1.2.1
    ...nd equality statements in the ABox were still not handled correctly if the ontology was nondeterministic, custom data ranges were not loaded correctly in some
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  • ChangeAnalysisTab
    ...nagement plugin. Changes and annotations can be explored based on authors, ontology terms, and visualized with respect to the life cycle of the project. ...odes and two authors are connected if at some point they modified the same ontology entity. This represents a social dependency network between the various aut
    2 KB (336 words) - 09:33, May 19, 2010
  • Protege 3.4.4 Release Notes
    * Added an ontology containing a large number of SQWRL queries to the set of pre-installed exam ...agement plug-in. Changes and annotations can be explored based on authors, ontology terms, and visualized with respect to the life cycle of the project.
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  • Loading A DatabaseProject
    ...page describes how you can access programmatically (add, query, modify) an ontology stored in one of the Protege 4 database backends. There are currently 2 bac We will give some examples of useful code for accessing the database ontology api. There is now a [http://smi-protege.stanford.edu/repos/protege/protege
    10 KB (1,180 words) - 22:41, September 30, 2011
  • OntoGraf
    ...s layouts are supported for automatically organizing the structure of your ontology. Different relationships are supported: subclass, individual, domain/range ** Interactive graph-based visualization of the ontology terms.
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  • Workflow ontology
    = The Workflow ontology = ...tion of the <code>Workflow</code> class (or subclass) in the ontology. The ontology captures the structure of the workflow - using classes, and a specific work
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  • ProtegeOWL API Programmers Guide
    The Protege-OWL API is an open-source Java library for the Web Ontology Language (OWL) and RDF(S). The API provides classes and methods to load and The Protege-OWL API is an open-source Java library for the Web Ontology Language (OWL) and RDF(S). The API provides classes and methods to load and
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  • Protege 4.1 Beta Release Notes
    ...Manchester OWL Syntax is now discouraged as a format for saving the entire ontology as certain axioms cannot be represented in this format and are lost during * Fixed the ontology reload feature.
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  • WebProtegeLayoutConfig
    ...a predefined tab in the user interface, use the '''Add tab''' menu in the ontology toolbar (top right corner). To add portlets to a tab, use the menu '''Add c <name>edu.stanford.bmir.protege.web.client.ui.ontology.classes.ClassesTab</name>
    16 KB (2,302 words) - 15:30, February 27, 2014
  • PropertyFormPortlet
    * '''externalreference''' - widget to create a reference to an external ontology or terminology stored in BioPortal Below is an example from the Newspaper ontology:
    11 KB (1,324 words) - 17:13, November 30, 2016
  • DISCOWordSpaces
    languages and domains. DISCO Word Spaces helps at ontology building by suggesting similar and related words.
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  • Protege 5 Development Environment
    ...ients (such as the desktop application) to browse and edit concurrently an ontology stored on a Protege 5 server. ...onedOntologyDocument are sufficient to do many operations on a checked out ontology including update, commit and save.
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  • BuildingSemanticWebApplications
    ...the Semantic Web, perform queries on them, add or edit resources from the ontology, classify instances and classes, and write out resulting ontologies to a fi ...ve, the application has hard-coded behavior that depends on the travel.owl ontology, which contains classes like '''Activity''' and '''Destination'''. The app
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  • ProgrammingWithProtegeOWL
    ...instances of a certain class (the '''Destination''' class from the travel ontology) and want to easily allow users to add new instances. Such a component coul //for the travel.owl ontology. Example:
    19 KB (2,809 words) - 12:54, July 1, 2010
  • SOVA
    ...s a Protege plugin to full ontology visualization. Finally we can show all ontology's elements: classes, individuals, properties, anonymous classes and relatio ==Simple Ontology Visualization API==
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  • ProtegeOWL API Advanced Topics
    ...g code iterates through all user-defined named classes in the "travel.owl" ontology and prints their instances: //for the travel.owl ontology. If you do this, it is more robust
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  • ProtegeOWL API Basics
    ..., which provides access to the top-level container of the resources in the ontology. You can use OWLModel to create, query, and delete resources of various typ ...odels, also from existing OWL files. For example, you can load an existing ontology from the web using
    24 KB (3,148 words) - 13:26, November 21, 2010
  • WebProtegeNotifications
    ...es between two types of changes - '''ontology changes and note changes'''. Ontology changes are additions to trees, or changes in properties. Note changes are ...notification period here. WebProtege will inform you of any changes to the ontology (not related to notes) on your watched entities or branches after this peri
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  • Protege 3.4.5 Release Notes
    * Added new options to the Change menu (under Change | Clean Up Changes Ontology...): * Added a column in the Change History table to display the ontology entity on which the change occurred.
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  • Pr4 UG co
    for codification of [[{{#var:G}}Ontology|ontologies]]. of an [[{{#var:G}}OWL|OWL]] [[{{#var:G}}Ontology|ontology]]. ...
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  • Pr4 UG co Annotation
    of an [[{{#var:G}}OWL|OWL]] [[{{#var:G}}Ontology|ontology]]. Although some annotations are specific to a given ontology,
    2 KB (263 words) - 13:55, July 27, 2010
  • Pr4 UG co Ontology
    == Ontology == An [[{{#var:G}}Ontology|ontology]] is a formally-defined vocabulary
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  • Pr4 UG ex
    This chapter describes assorted example [[{{#var:G}}Ontology|ontologies]]. === [[Pr4_UG_ex_Pizza|Pizza Ontology]] ===
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  • Pr4 UG ex Pizza
    == Pizza Ontology == The Pizza [[{{#var:G}}Ontology|ontology]]
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  • Pr4 UG h2
    [{{#var:wp}}/Web_Ontology_Language Web Ontology Language] (OWL), === [[Pr4_UG_h2_On_Create|Ontology Creation]] ===
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  • Pr4 UG h2 En Name
    [{{#var:wp}}/Web_Ontology_Language Web Ontology Language] (OWL), If the entire ontology is tied to the same base URI,
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  • Pr4 UG mi
    other ontology editors and tools for knowledge management. you can cause Protege 4 to create or open (and load) an ontology. ...
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  • Pr4 UG mi Conventions
    <tr><td width=25><tt>On</tt></td><td>Ontology</td></tr> [[Pr4_UG_co_Ontology|Ontology page]]
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  • Pr4 UG mi Glossary
    [[#Ontology |Ontology]], In the Pizza Ontology,
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  • Pr4 UG mi Introduction
    on topics such as ontology creation and the OWL dialects, such as the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
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  • Pr4 UG mi Outline
    [[Pr4_UG_co_Ontology |Ontology]] [[Pr4_UG_rp_Tab_Sub_Onto |Sub Ontology]],
    7 KB (980 words) - 13:57, July 27, 2010
  • Pr4 UG mi Page List
    2 [[Pr4_UG_co_Ontology | Ontology ]]<br> 2 [[Pr4_UG_ex_Pizza | Pizza Ontology ]]<br>
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  • Pr4 UG mi Resources
    Chapter 6 (What Do You Mean, "Ontology"?) * [{{#var:wp}}/Ontology Ontology] (WP)
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  • Pr4 UG mi Selection
    other ontology editors and tools for knowledge management. === Is an ontology really what I need? ===
    4 KB (583 words) - 11:02, July 28, 2010
  • Pr4 UG mi Startup
    or open (and load) an [[{{#var:G}}Ontology|ontology]]. === Create new OWL Ontology ===
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  • Pr4 UG rm
    ...{#var:G}}Menu|menu]] is used to access {{#var:Pr4}}'s [[{{#var:G}}Ontology|ontology]]-[[{{#var:G}}Refactoring|refactoring]] facilities. ...
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  • Pr4 UG rm Edit
    remove the assertion from the ontology. containing all of the individuals in the ontology.
    3 KB (473 words) - 12:10, February 25, 2011
  • Pr4 UG rm File
    Create a new ontology in the current or new (if need be) workspace. Open an existing ontology (and its imports)
    3 KB (462 words) - 12:11, February 25, 2011
  • Pr4 UG rm Refactor
    [[{{#var:G}}Ontology|ontology]]-[[{{#var:G}}Refactoring|refactoring]] facilities. ==== Change ontology URI... ====
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  • Pr4 UG rm Tools
    that will be added to the ontology.
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  • Pr4 UG rm View
    ==== Show the imports closure of the active ontology ==== ...of the ontologies that are imported (directly or indirectly) by the active ontology.
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  • Pr4 UG rm Window
    ===== Ontology views > ===== * [[Pr4_UG_rv_On_Prefixes |Ontology prefixes]]
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  • Pr4 UG rp
    which includes several spreadsheet-style views of an ontology, (Ontology Pre-Processor Language). ...
    8 KB (1,234 words) - 14:01, July 27, 2010
  • Pr4 UG rp OWL API
    for the Web Ontology Language and RDF(S).
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  • Pr4 UG rp Tab Matrix
    which includes several spreadsheet-style views of an ontology,
    519 bytes (71 words) - 14:03, July 27, 2010
  • Pr4 UG rp Tab OPPL
    (Ontology Pre-Processing Language). to be applied in an OWL ontology.
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  • Pr4 UG rp Tab OWLViz
    enables class hierarchies in an OWL ontology
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  • Pr4 UG rp Tab Sub Onto
    == Tab - Sub Ontology == Sub Ontology [[{{#var:G}}Tab|tab]],
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  • Pr4 UG rp View Bookmarks
    along with your ontology annotations for future reference.
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  • Pr4 UG rp View Cloud
    that lets users visualize an ontology Wondering about the "shape" of your ontology?
    1 KB (228 words) - 14:06, July 27, 2010
  • Pr4 UG rp View DL Learn
    ...ns definition and super class axioms based on existing instance data in an ontology <li>can handle cases where an ontology is already damaged,
    1 KB (181 words) - 14:06, July 27, 2010
  • Pr4 UG rp View OPL
    that allows users to experiment with Ontology Processing Language (OPL), as part of the Gene Ontology Next Generation (GONG) project.
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  • Pr4 UG rp View OWL2UML
    which represents the active [[{{#var:G}}OWL|OWL]] ontology [{{#var:wp}}/Ontology_Definition_Metamodel Ontology Definition Metamodel],
    753 bytes (113 words) - 14:07, July 27, 2010
  • Pr4 UG rp View OWLDoc
    Updates to the ontology are reflected immediately. The browser is also implemented as a standalone web ontology browser.
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  • Pr4 UG rp View TerMine
    for rapidly bringing these terms into an OWL ontology.
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  • Pr4 UG rt
    === [[Pr4_UG_rt_Active_Ontology|Active Ontology]] === The Active Ontology [[{{#var:G}}Tab|tab]]
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  • Pr4 UG rt Active Ontology
    == Active Ontology Tab == The Active Ontology [[{{#var:G}}Tab|tab]]
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  • Pr4 UG rt Entities
    is the workhorse of the ontology editor. of the classes, properties, and individuals in an ontology.
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  • Pr4 UG rt OntoGraf
    of your ontology.
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  • Pr4 UG rv
    === [[Pr4_UG_rv_On|Ontology Views]] === [[{{#var:G}}Ontology|ontology]] [[{{#var:G}}View|views]]
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  • Pr4 UG rv Cl Annotations
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]], of the [[Pr4_UG_ex_Pizza|Pizza Ontology]],
    2 KB (320 words) - 14:12, July 27, 2010
  • Pr4 UG rv Cl Description
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
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  • Pr4 UG rv Cl General class axioms
    * [[Pr4_UG_rt_Active_Ontology|Active Ontology]], in the "General Axioms" sub-tab <!-- ?(ToDo: add enabling content to Pizza ontology) -->
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  • Pr4 UG rv Cl OWLViz
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
    2 KB (249 words) - 14:13, July 27, 2010
  • Pr4 UG rv Cl Supcl hier
    added to the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
    1 KB (211 words) - 14:13, July 27, 2010
  • Pr4 UG rv Cl Supcl hier inf
    added to the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
    2 KB (341 words) - 14:13, July 27, 2010
  • Pr4 UG rv Cl Usage
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]],
    2 KB (299 words) - 14:13, July 27, 2010
  • Pr4 UG rv Da Annotations
    <!-- ?(ToDo: add enabling content to Pizza ontology) -->
    1 KB (172 words) - 14:14, July 27, 2010
  • Pr4 UG rv Da Characteristics
    <!-- ?(ToDo: add enabling content to Pizza ontology) -->
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  • Pr4 UG rv Da Description
    <!-- ?(ToDo: add enabling content to Pizza ontology) -->
    1 KB (191 words) - 14:14, July 27, 2010
  • Pr4 UG rv Da Domains and ranges
    <!-- ?(ToDo: add enabling content to Pizza ontology) -->
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  • Pr4 UG rv Da Usage
    added to the [[Pr4_UG_ex_Pizza|Pizza Ontology]]. <!-- ?(ToDo: add enabling content to Pizza ontology) -->
    2 KB (326 words) - 14:14, July 27, 2010
  • Pr4 UG rv Dt Description
    <!-- ?(ToDo: add enabling content to Pizza ontology) -->
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  • Pr4 UG rv In Annotations
    <!-- ?(ToDo: add enabling content to Pizza ontology) -->
    1 KB (172 words) - 14:16, July 27, 2010
  • Pr4 UG rv In Description
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
    1 KB (171 words) - 14:16, July 27, 2010
  • Pr4 UG rv In Individuals
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
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  • Pr4 UG rv In Inds by type inf
    added to the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
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  • Pr4 UG rv In Prop assertions
    added to the [[Pr4_UG_ex_Pizza|Pizza Ontology]]. <!-- ?(ToDo: add enabling content to Pizza ontology) -->
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  • Pr4 UG rv In Usage
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
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  • Pr4 UG rv Mi Axiom annotations
    added to the [[Pr4_UG_ex_Pizza|Pizza Ontology]]. <!-- ?(ToDo: add enabling content to Pizza ontology) -->
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  • Pr4 UG rv Mi M syntax entity rend
    added to the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
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  • Pr4 UG rv Mi Query
    against the current ontology. The "Add to ontology" button adds the entered query to the ontology.
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  • Pr4 UG rv Mi Selected entity
    added to the [[Pr4_UG_ex_Pizza|Pizza Ontology]]. <!-- ?(ToDo: add enabling content to Pizza ontology) -->
    1 KB (188 words) - 14:18, July 27, 2010
  • Pr4 UG rv Ob Annotations
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
    1 KB (169 words) - 14:18, July 27, 2010
  • Pr4 UG rv Ob Characteristics
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
    1 KB (203 words) - 14:19, July 27, 2010
  • Pr4 UG rv Ob Description
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
    1 KB (207 words) - 14:19, July 27, 2010
  • Pr4 UG rv Ob Domains and ranges
    added to the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
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  • Pr4 UG rv Ob Usage
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
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  • Pr4 UG rv On
    == Ontology views == covers the [[{{#var:G}}Ontology|ontology]] views
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  • Pr4 UG rv On Annotations
    == Ontology - Ontology Annotations == for an [[{{#var:G}}Ontology|ontology]].
    1 KB (196 words) - 14:20, July 27, 2010
  • Pr4 UG rv On DL metrics
    == Ontology - DL Metrics == for the current [[{{#var:G}}Ontology|ontology]].
    1 KB (236 words) - 13:40, January 9, 2012
  • Pr4 UG rv On Imported ontologies
    == Ontology - Imported Ontologies == of imported [[{{#var:G}}Ontology|ontologies]].
    1 KB (162 words) - 14:20, July 27, 2010
  • Pr4 UG rv On M syntax rend
    == Ontology - Manchester syntax rendering == for an [[{{#var:G}}Ontology|ontology]].
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  • Pr4 UG rv On Nav subject
    == Ontology - Navigation subject == for an [[{{#var:G}}Ontology|ontology]].
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  • Pr4 UG rv On Nav view
    == Ontology - Navigation view == of the Navigation view for an [[{{#var:G}}Ontology|ontology]].
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  • Pr4 UG rv On Ontology metrics
    == Ontology - Ontology Metrics == for an [[{{#var:G}}Ontology|ontology]].
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  • Pr4 UG rv On OWL func syntax rend
    == Ontology - OWL Functional Syntax Rendering == for an [[{{#var:G}}Ontology|ontology]].
    1 KB (171 words) - 14:21, July 27, 2010
  • Pr4 UG rv On OWL XML rend
    == Ontology - OWL/XML rendering == for an [[{{#var:G}}Ontology|ontology]].
    1,014 bytes (166 words) - 14:21, July 27, 2010
  • Pr4 UG rv On OWLViz Imports Graph
    == Ontology - OWLViz Imports Graph == for an [[{{#var:G}}Ontology|ontology]].
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  • Pr4 UG rv On RDF XML rend
    == Ontology - RDF/XML Rendering == for an [[{{#var:G}}Ontology|ontology]].
    974 bytes (160 words) - 14:22, July 27, 2010
  • Pr4 UG rv On Rules
    == Ontology - Rules == for an [[{{#var:G}}Ontology|ontology]].
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  • Pr4 UG rv On Classification results
    == Ontology - Classification results == for an [[{{#var:G}}Ontology|ontology]].
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  • Pr4 UG ui
    Although {{#var:Pr4}} is commonly called an "ontology editor", of an ontology.
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  • Pr4 UG ui Main Window
    * an ontology-selection pulldown menu
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  • Pr4 UG ui Views
    some part of the ontology. >&nbsp;Ontology&nbsp;</font></td></tr>
    5 KB (775 words) - 14:23, July 27, 2010
  • OntoTweet
    = Ontology Trends = [[Image:Ontotweet_ontology.png|500px| Ontology trends]]
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  • Bayesian Network Tab (BNTab) 1.1.1
    # As an example open with Protege 4.1 the security ontology at http://securityontology.sba-research.org/securityontology.owl # As an example open with Protege 4.1 the security ontology at http://securityontology.sba-research.org/securityontology.owl
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  • Bayesian Network Tab (BNTab) 1.1.3
    # As an example open with Protege 4.1 the security ontology at http://securityontology.sba-research.org/securityontology.owl # As an example open with Protege 4.1 the security ontology at http://securityontology.sba-research.org/securityontology.owl
    2 KB (307 words) - 05:21, January 24, 2013
  • NavigOWL
    ...ilitates the user to build mental map in more clear and consistent view of ontology graph. The tool supports rdf and owl Ontologies to visualize them. ...s graph by rendering nodes and edges, based upon role-relations defined in ontology taxonomy.
    3 KB (400 words) - 02:43, June 6, 2014
  • SADI Service plugin
    ...es by integrating the service creation and deployment environment into the ontology design environment. This allows drag-n-drop editing and testing of SADI Se
    866 bytes (108 words) - 12:22, February 14, 2011
  • Protege4ErrorClasses
    You may open an ontology and find subclasses of owl:Thing named Error1, Error2, etc. If you save your ontology,
    1 KB (191 words) - 12:04, February 28, 2011
  • OWL2RDFParserDeclarationRequirement
    ...e files that are slightly malformed. A good OWL 2 tool can then write the ontology out in a manner that fixes any problems found during the parse. ...nt that an fully OWL 2 compliant parser should reject the following simple ontology:
    6 KB (1,014 words) - 12:47, March 2, 2011
  • POSC 201103 Course Prep
    During the ontology visualization session on Thursday, we plan to demo the [[OWLViz]] plug-in,
    4 KB (641 words) - 13:21, November 7, 2013
  • Protege 3.4.6 Release Notes
    ...ge:Owldoc_for_pizza_screenshot.jpg|thumb|600px|OWLDoc output for the Pizza ontology]]
    917 bytes (128 words) - 11:48, July 27, 2011
  • RDB2ONT
    |Description=automatic tool for creating ontology from database
    251 bytes (25 words) - 08:33, April 4, 2011
  • BioPortal Import Plugin
    ...s users to import classes from external ontologies stored in the BioPortal ontology repository. The user can import entire trees of classes with a desired dept ...using the Refactor menu -> Copy/move/delete axioms). To open the BioPortal ontology in Protege 5.x, do these simple steps:
    14 KB (2,204 words) - 14:34, June 13, 2014
  • OWLDocForProtege3
    ...s to generate a set of Javdoc-style HTML pages, which document the current ontology.
    566 bytes (85 words) - 16:22, April 25, 2011
  • Protege 4.1 RC1 Release Notes
    * After classifying an inconsistent ontology, Protege now displays a dialog with an experimental explanation facility.
    1 KB (188 words) - 15:36, May 20, 2011
  • Protege-OWL 3 FAQ
    ...mailman/listinfo/protege-owl protege-owl mailing list] with a link to your ontology file. ...rder of values for a property may be different the next time you load your ontology. Also, OWL/RDF does not allow you to assign duplicates to property values.
    11 KB (1,879 words) - 18:22, May 20, 2011
  • Protege 4.1 RC3 Release Notes
    * Improved the algorithm for resolving ontology imports. For more detail, please see [http://goo.gl/FSTTC item #3212] in o
    777 bytes (102 words) - 11:46, May 23, 2011
  • Protege 4.1 RC4 Release Notes
    ...ll most commonly be used when providing the name of an entity from another ontology that is not imported. ...types for the active ontology and will update its contents when the active ontology is changed.
    1 KB (213 words) - 14:43, May 23, 2011
  • BeanShell
    ...will have access to a full array of powerful Java tools for analyzing the ontology. These tools range from the full set of [http://owlapi.sourceforge.net OWL ontology = mngr.getActiveOntology();
    32 KB (4,049 words) - 12:59, June 15, 2011
  • Protege 4.1 RC5 Release Notes
    * Fixed a bug where the reasoner would be out of sync with the ontology, but could not be synchronized by choosing Reasoner | Synchronize reasoner.
    1 KB (215 words) - 15:59, July 5, 2011
  • Protege 3.4.7 Release Notes
    ...ynonyms, defintions, and metadata, e.g., import author, timestamp, source ontology, etc. [[BioPortal_Import_Plugin|(read more)]]. New versions will be downlo
    2 KB (292 words) - 00:11, November 5, 2013
  • P4 1 Release Announcement
    * Protege's ontology repository mechanism is now implemented according to the [http://www.oasis- ...tarted was simplified. Selecting the reasoner and choosing to classify the ontology are now divided into separate steps. New reasoner preferences were also add
    8 KB (1,257 words) - 15:02, July 26, 2011
  • Ontology Generation Plugin (DOG4DAG)
    |Description=The ontology generation plug-in includes ...ed terms to existing ontologies using the BioPortal Web Service or the EBI Ontology Lookup Service
    1 KB (129 words) - 05:14, December 2, 2011
  • Ontology Generation Plugin (DOG4DAG) 3.3.0
    |VersionOf=Ontology Generation Plugin (DOG4DAG) |Changelog=Added support for BioPortal ontology lookup services
    305 bytes (38 words) - 07:03, July 26, 2011
  • DOG4DAG 3.3.0
    #REDIRECT [[Ontology Generation Plugin (DOG4DAG) 3.3.0]]
    56 bytes (6 words) - 06:51, July 26, 2011
  • ELK
    |Description=ELK is a free and open source reasoner for the lightweight ontology language OWL 2 EL. ...the [http://owlapi.sourceforge.net/ OWL API], Protégé, the [[Snow Owl]] ontology editor, or a basic command line interface. ELK is available under the Apach
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  • Logical Difference Vizualiser (LogDiffViz)
    ...account the semantic meaning of the underlying description logics on which ontology languages are built, rather than syntactical or structural differences. The ...prototype plugin and is by no means stable or guaranteed to work for every ontology. For details please see the below
    4 KB (639 words) - 13:19, March 21, 2013
  • Protege 4.2 Alpha Release Notes
    ...the 4.2 series will be the roll out of several new plug-ins, including an ontology difference tool, enhanced explanation support, client-server capabilities, ...Tab" from Window | Tabs, or the "SPARQL Query" view from Window | Views | Ontology views.
    2 KB (354 words) - 13:28, March 14, 2012
  • Ontology Generation Plugin (DOG4DAG) 3.4.0
    |VersionOf=Ontology Generation Plugin (DOG4DAG)
    467 bytes (71 words) - 06:25, November 8, 2011
  • Ontology Generation Plugin (DOG4DAG) 3.4.1
    |VersionOf=Ontology Generation Plugin (DOG4DAG) |Changelog=Bugfix: Switching between BioPortal and EBI OLS for ontology lookup
    355 bytes (43 words) - 05:16, December 2, 2011
  • POSC 201203 Course Prep
    During the ontology visualization session on Thursday afternoon, we plan to demo the [[OWLViz]]
    4 KB (642 words) - 13:20, November 7, 2013
  • Protege 4.2 Beta Release Notes
    ...the 4.2 series will be the roll out of several new plug-ins, including an ontology difference tool, enhanced explanation support, client-server capabilities, ...ty of the appropriate type was selected. For example, if a user opened an ontology and selected the class usage view before selecting a class, the view would
    7 KB (995 words) - 17:19, November 13, 2012
  • Protege-OWL Code Generator
    |Description=Allows users to generate Java code from an ontology.
    467 bytes (50 words) - 18:47, March 18, 2012
  • POSC 201205 Course Prep
    During the ontology visualization session on Thursday afternoon, we plan to demo the [[OWLViz]]
    3 KB (445 words) - 13:20, November 7, 2013
  • OWLDoc 2.0.0
    ...nto this project that used to be available as 3rd party libraries from the Ontology Browser project.
    383 bytes (48 words) - 11:18, May 8, 2012
  • OWL2ToRDB
    |Description=OWL2ToRDB is a Protégé plugin for transforming OWL 2 ontology into relational database. ...ing OWL 2 ontology into relational database. It combines direct mapping of ontology classes, properties and instances to database schema with representing axio
    748 bytes (91 words) - 06:06, July 24, 2012
  • Protege4ClientServer
    ...changes, he can commit them making them available to other editors of the ontology. Alternatively, an editor making changes to his local copy can save his co ...ery commands. The Protege 4 client can be used in this manner as well: an ontology editor can choose not to turn on auto-update and make all his updates and c
    24 KB (4,034 words) - 17:07, March 11, 2015
  • HypergraphDB Plugin and Server
    |Topic2=Ontology Version Control |Topic5=Ontology Server
    1 KB (143 words) - 14:57, October 24, 2012
  • POSC 201303 Course Prep
    During the ontology visualization session on Thursday afternoon, we plan to demo the [[OWLViz]]
    3 KB (515 words) - 13:20, November 7, 2013
  • WebProtegeCompiling
    ...the war/projects/metaproject directory. The metaproject is a frame-based ontology that models permissions (a more [[Protege_Client-Server_Tutorial#The_Metapr
    10 KB (1,475 words) - 18:13, April 25, 2013
  • BNGen
    |Description=A plug-in to generate a Bayesian Network from an Ontology, loosely based on BNTab and works with the JSMILE API. One of the main goal
    481 bytes (67 words) - 07:22, February 26, 2013
  • P4 2 Release Announcement
    This release comes with several new plug-ins, including an ontology difference tool, enhanced explanation support, and support for code generat ...WL Diff plug-in for calculating the differences between two versions of an ontology. OWL Diff is loosely based on the [[PROMPT]] plug-in for Protege 3.x. Che
    8 KB (1,242 words) - 10:05, March 18, 2013
  • WebProtegeTutorial SemTechBiz2013
    ...g. Many attendees may be familiar with the Protege tool which has provided ontology-editing capabilities to its more than 200,000 registered users. While vario
    2 KB (271 words) - 11:20, March 7, 2013
  • XML2OWL
    ...tion=This plugin allows for the mapping of new XML data to an existing OWL ontology through Protege. Mappings ...ng to user-provided rules, and result in new individuals and axioms in the ontology.
    613 bytes (81 words) - 08:07, March 29, 2013
  • POSC 201309 Course Prep
    During the ontology visualization session on Tuesday afternoon we plan to demo the [[OWLViz]] p During the ontology-based data access session on Wednesday afternoon we plan to demo the [http:
    4 KB (634 words) - 13:19, November 7, 2013
  • Ontology Evaluation
    |Description=A tab widget plug-in for ontology evaluation from a set of criteria. |HomepageURL=http://code.google.com/p/ontology-evaluation/
    503 bytes (58 words) - 09:00, July 31, 2013
  • Ontology Evaluation 4.1
    |VersionOf=Ontology Evaluation |File=https://ontology-evaluation.googlecode.com/files/evaluation4.1.zip
    233 bytes (23 words) - 16:08, April 23, 2013
  • Ontology Evaluation 3.4
    |VersionOf=Ontology Evaluation |File=https://ontology-evaluation.googlecode.com/files/evaluation3.4.zip
    235 bytes (23 words) - 16:09, April 23, 2013
  • Protege 3.5 Release Notes
    ...or terms in all BioPortal ontologies, and navigate to a specific BioPortal ontology to import branches of the class tree. ...unt property to the protege.properties file for controlling whether or not ontology notes are precached. If set to false, no precaching is done. This improves
    5 KB (680 words) - 16:48, March 5, 2014
  • MigrateOntologiesFromWP1
    = Instructions on moving your ontology from the WebProtege 1.0 server to the new WebProtege = This page documents the steps for moving an ontology from the WebProtege 1.0 server (currently on: http://wp-obs.stanford.edu) t
    2 KB (302 words) - 03:24, April 25, 2013
  • OntoCheck
    ...lugin allows the user to specify checks on certain properties of an active ontology (OntoCheck) and allows for improvements (OntoCure) in the areas of |HomepageURL=http://www2.imbi.uni-freiburg.de/ontology/OntoCheck/
    2 KB (214 words) - 06:33, April 27, 2015
  • WebProtege1.0AdminGuide
    ''' Find [[MigrateOntologiesFromWP1|here]] instructions on how to move your ontology to the new WebProtege server (http://webprotege.stanford.edu) ''' ...as Tomcat. WebProtégé will '''NOT''' use the Protégé server to manage ontology loading. The ''Local Mode'' is the default mode of operation for WebProté
    25 KB (3,879 words) - 18:13, April 25, 2013
  • Protege4OWLDiff
    This functionality allows the comparison of different versions of the same ontology and it is loosely based on the [[PROMPT]] algorithms.
    444 bytes (69 words) - 21:26, May 23, 2016
  • Protege 4 Plugin for Oracle Database
    ...ner from the Reasoner menu, such as HermiT and Fact, and save the inferred ontology to Oracle Database in an RDF model.
    4 KB (571 words) - 09:02, October 21, 2015
  • Testing Firewalls and Web Proxies
    ...e able to access many ontologies on the web including the proverbial pizza ontology.
    8 KB (1,380 words) - 15:41, July 12, 2013
  • Quick start for Protege Plugin with maven
    <groupId>edu.ontology.plugin</groupId> <description>A plugin to perform some amazing ontology task</description>
    3 KB (494 words) - 12:19, September 1, 2013
  • Protege Server design
    ...ision to the next. Thus, for example, if a user wants to take an existing ontology and place it on the server, a client may perform the following steps ...gate to the directory where she wants to place the original version of her ontology.
    6 KB (917 words) - 14:42, September 13, 2013
  • NoHR
    ...or Protégé that allows its users to query knowledge bases composed of an ontology in OWL 2 EL or OWL 2 QL (from version 2.0.0 on) and a set of Reasoning Rule Using a top-down reasoning approach, which means that only the part of the ontology and rules that is relevant for the query is actually evaluated, NoHR combin
    1 KB (190 words) - 08:27, October 12, 2015
  • PSC 201403 Course Prep
    During the ontology visualization session on Thursday afternoon we plan to demo the [[OWLViz]]
    4 KB (545 words) - 15:06, March 10, 2014
  • ProtegeProject FAQ
    ...ject offers WebProtege and Protege Desktop, which are free and open source ontology editing applications.
    5 KB (755 words) - 18:30, January 28, 2014
  • Ontology101
    == Ontology Development 101: A Guide to Creating Your First Ontology == ...e authors experiences developing and maintaining ontologies in a number of ontology environments including Protege, [http://www.ksl.stanford.edu/software/ontol
    2 KB (292 words) - 17:33, February 13, 2014
  • Protege3JDBCSchema
    * Develop (or use) a mapping language that would allow us to map the ontology to any RDBMS schema
    7 KB (1,096 words) - 12:13, March 25, 2014
  • Protege 5.0 Beta Release Notes
    * The Active Ontology tab now shows ontology metrics by default ([http://github.com/protegeproject/protege/issues/46 #46 ...ion properties, making the Annotations view more user-friendly for the bio-ontology community ([http://github.com/protegeproject/protege/issues/47 #47]).
    6 KB (821 words) - 13:11, May 23, 2016
  • VOWL
    ...(OWL) that are combined to a force-directed graph layout representing the ontology.<br/>
    1,003 bytes (132 words) - 10:45, November 12, 2016
  • IRIS
    ...s. Extracted product information is presented in a GoodRelations-compliant ontology. IRIS also automatically marks up your products using RDFa or Microdata. Cr
    897 bytes (125 words) - 01:42, June 7, 2014
  • Protege-nrepl
    ...ning the two Protege can be used to visualize live the current state of an ontology written in Tawny-OWL
    886 bytes (120 words) - 01:17, June 19, 2014
  • MappingOntology
    = Mapping Ontology = ...onica Crubezy). Here are some tips on representing complex mapping in this ontology.'''
    7 KB (1,133 words) - 14:09, June 24, 2014
  • ConfiguringPromptProjects
    * Open in Protege: the new version of the ontology * Specify in Prompt: the old version of the ontology
    1 KB (235 words) - 14:11, June 24, 2014
  • SavingMappings
    ...respondences that you create and creates instances of its built-in mapping ontology behind the scenes. ...y thanks to Monica Crubezy for providing the ontology. Descriptions of the ontology can be found at http://smi-web.stanford.edu/pubs/SMI_Abstracts/SMI-2003-095
    1 KB (225 words) - 14:09, June 24, 2014
  • UserManagementInPromptDiff
    ...er management in PromptDiff. Suppose you have several users modifying your ontology in multi-user mode. If you enable journaling on the server project before y
    1 KB (204 words) - 14:09, June 24, 2014
  • SavingDiffPromptPlugin
    When Prompt compares two versions of an ontology, it generates a diff table. You can see this table on the '''Table View tab
    1 KB (214 words) - 14:10, June 24, 2014
  • ProtégéLOV 0.1.0-beta
    - replace the selected term in the current ontology
    512 bytes (65 words) - 07:34, May 25, 2015
  • Ontop
    ...nceptual representation of the domain of interest, provided in terms of an ontology, to which the data sources are mapped. Key features of Ontop are its solid
    1 KB (169 words) - 01:37, June 18, 2015
  • InstanceGridWidget
    ...ng this parameter is optional, as this information can be deduced from the ontology. However, the type information is not always calculated in the code (and is ...here the user is presented with the class hierarchy of (a branch from) the ontology, from which he or she can choose one class.<BR>
    7 KB (1,233 words) - 16:41, March 1, 2017
  • OWLAx
    |Description=Ontology Design Pattern Plugin for Protege. It gives the option to sketch the ontology model within protege and automatically generate axioms from the figure.
    558 bytes (63 words) - 21:30, December 14, 2016
  • CompGuide Editor
    # Before using CGuide Wizard Options view, load the required CompGuide Ontology model into the Protégé application
    1 KB (179 words) - 02:53, July 19, 2017
  • Expert System Shell r4f-pro
    ...t for rete4frames rule engine and expert system shell based on Protege-3.5 ontology editor supplemented with visual creation of algorithms. It combines two wel
    864 bytes (101 words) - 02:21, October 2, 2017
  • IDESSP
    Based on ontology editor Protege-frames, GIS library OpenMap and rule engine and expert syste
    806 bytes (96 words) - 11:43, December 17, 2017
  • OBDA Systems
    ...The foundation of these solutions is representation and reasoning through ontology modelling.
    451 bytes (61 words) - 02:50, January 19, 2018
  • Mastro DL-Lite Reasoner
    ...of the ontology. To access data, users can specify SPARQL queries over the ontology and make use of the query answering services provided by Mastro.
    1 KB (142 words) - 03:24, January 22, 2018
  • OntoDebug
    |Description=OntoDebug is a free and open-source interactive ontology debugger plugin for Protégé to resolve and repair inconsistent and incohe ...inconsistency or incoherency in faulty ontologies by applying interactive ontology debugging.
    2 KB (238 words) - 06:23, August 7, 2019
  • WebProtege
    '''WebProtégé is a free, open source collaborative ontology development environment for the Web. ''' ...tp://www.semantic-web-journal.net/content/webprot%C3%A9g%C3%A9-distributed-ontology-editor-and-knowledge-acquisition-tool-web here].
    4 KB (483 words) - 10:48, August 6, 2019
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