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  • Protege Client Server Tutorial Advanced
    ...he server will cache information about certain frames from the server side ontology while the client initializes. For example, if the client adds the system pr
    14 KB (2,183 words) - 11:37, October 1, 2010
  • Protege Client Server Tutorial Administration
    ...er is in a transaction, other Protege clients are not able to write to the ontology. The Users table also shows the server backlog - the number of requests the
    11 KB (1,836 words) - 13:04, December 16, 2009
  • CollabProtege Tutorial 2009 Conference
    = Collaborative Ontology Development with Protege = ...otege rich application, or in [[WebProtege]] - a web-based and lightweight ontology editor.
    4 KB (559 words) - 22:54, March 12, 2009
  • Resource Bundles
    ...s, labels, and dialog titles. This is '''not''' a mechanism for authoring ontology and knowledge-base content in multiple languages simultaneously. Such suppo
    10 KB (1,597 words) - 17:33, May 1, 2009
  • OWL2UML
    ...lly generates UML diagram which represents active OWL ontology using OMG's Ontology Definition Metamodel.
    479 bytes (61 words) - 02:54, May 21, 2010
  • P4UiComponentSummary
    example: '''org.protege.editor.owl.ui.ontology.wizard.create.CreateOntologyWizard''' An editor with a built in file selection dialog (as used by Open ontology dialogs etc)
    7 KB (906 words) - 23:10, May 23, 2016
  • PluginAnatomy
    .... The purpose of a Protege view is to provide a view of some aspect of an ontology. In the Protege interface, a Protege view is easily recognized. It has a ..."Example View Component". If you click on the View menu and then select "Ontology Views" you will see the "Example View Component" listed there. However on
    46 KB (7,155 words) - 23:11, May 23, 2016
  • WebProtegeEvaluation
    Your task will be to extend an existing ontology in WebProtege and to provide feedback about your experience,.
    2 KB (378 words) - 17:22, May 26, 2009
  • P4 Release Announcement
    While Protege 4.0 was under development, the OWL 2 ontology language has been moving through the W3C recommendation process. This proce ...he first tools to support OWL 2. Our intent is to provide a well designed ontology editor
    4 KB (593 words) - 15:55, May 20, 2011
  • EasyDB
    ...which can be used to quickly asses relationships between instances in the ontology. The ontology is stored using the Jena database storage schema. This was selected for its
    616 bytes (88 words) - 12:07, August 17, 2010
  • P4APIOverview
    ...e are imports or otherwise). There needs to be some way to determine which ontology edits are performed on by default. It is reasonable that the user might wan ...space. By convention all new additions to the model are made in the active ontology.
    9 KB (1,406 words) - 23:14, May 23, 2016
  • P4 1PortingGuide
    * The changes API has been extended to support ontology name, annotation and import changes
    8 KB (1,103 words) - 13:25, January 5, 2010
  • Owl2Cool
    ...t which provides an interface to Protege users for transorming a given OWL ontology to the object-oriented language COOL. After the transformation it produces ...ject oriented languge of CLIPS named COOL in a class hierarchy made in OWL ontology.
    1 KB (163 words) - 03:16, July 8, 2009
  • BioPortal Reference Plugin
    ...cription=The BioPortal Reference Plugin allows the user to insert into the ontology references to external ontologies and terminologies stored in BioPortal. ...'''easy navigation''' from the domain ontology in Protege to the external ontology by simply clicking on the generated '''hyperlink of a reference'''. The hyp
    11 KB (1,744 words) - 16:09, May 9, 2014
  • WebProtegeDevelopersGuide GWT 1 5
    ...You modify this information in the "metaproject", which is a frame-based ontology that models permissions (a more [[Protege_Client-Server_Tutorial#The_Metapr
    12 KB (1,848 words) - 18:15, April 25, 2013
  • Axiomé
    ...ntly displayed to show a tree-table representation of the SWRL rules in an ontology. This tree-table enables users to explore the rule base and launch any of f
    4 KB (513 words) - 18:29, July 27, 2011
  • WebProtegeReleaseNotes
    * '''Ontology Id''' portlet - displays the id of the project root ontology (currently read only) * '''Ontology Annotations''' - displays the annotations for the project root ontology
    24 KB (3,670 words) - 12:31, February 14, 2022
  • ProtegeDocgen
    ...for (frame-based) Protege provides a quick export of all the content of an ontology (classes, instances and documentation) in various formats (html, pdf, fo... ...n plugin for Protege provides a quick export of all the content of a frame ontology (classes, instances and documentation) in various formats (html, pdf, fo...
    2 KB (307 words) - 08:34, October 14, 2009
  • Protege 4.0.1 Release Notes
    ...output format (e.g., OWL/XML, OWL Functional Syntax, etc.) when saving an ontology. Protege 4.0.1 only supports the RDF/XML format. The reason for this chan ...reload option if Protege encounters a syntax error while trying to load an ontology. This allows users to attempt to correct the problem and try again.
    1 KB (171 words) - 15:55, May 20, 2011
  • HermiT
    ...Language (OWL). Given an OWL file, HermiT can determine whether or not the ontology is consistent, identify subsumption relationships between classes, and much
    598 bytes (73 words) - 01:08, August 2, 2011
  • Protege41FullBuild
    A org.protege.editor.owl/src/org/protege/editor/owl/model/refactor/ontology A org.protege.editor.owl/src/org/protege/editor/owl/model/refactor/ontology/OntologyMigrator.java
    132 KB (19,779 words) - 08:34, December 2, 2009
  • Protege 4.0.2 Release Notes
    * Fixed a bug that prevented Protege from starting if an ontology with a bad URI was in the "Open recent" ontologies list. ...ing large ontologies, e.g., the [http://www.opencyc.org/downloads OpenCyc] ontology.
    633 bytes (90 words) - 12:25, July 26, 2011
  • Protege 3.4.2 Release Notes
    * Corrected a problem where the name of an ontology was determined by calculating the xml:base, which is not compatible with th ==== Modifications to the Changes & Annotation Ontology (ChAO) ====
    7 KB (1,099 words) - 17:09, April 27, 2011
  • DataMaster 1.3.2
    ...id ClassCastException when importing data from a database into an imported ontology that has non Jena back-end, for example it has a database back-end.
    2 KB (219 words) - 19:43, December 17, 2009
  • Importing Ontologies in P41
    In this section, I will walk you through adding an import to an ontology. The purpose of this page is to illustrate OWL 2.0 imports and explain the ...logy. Here is a simplification of the ontology declaration from the pizza ontology:
    19 KB (3,050 words) - 21:22, May 23, 2016
  • OLS2OWL
    OLS2OWL, an ontology repository manager plug-in developed for Protégé 4.0. The tool (1) facili
    1 KB (200 words) - 08:30, January 8, 2010
  • OntoBase 3.3.5
    -Automatic synchronization of ontology with source databases upon loading of the project;
    397 bytes (43 words) - 06:56, April 7, 2010
  • OBO Tools
    |Description=A set of Protege extensions that make it easier for OBO ontology developers to navigate and edit OBO ontologies in OWL.
    480 bytes (60 words) - 17:03, March 4, 2010
  • HermiT 1.2.1
    ...nd equality statements in the ABox were still not handled correctly if the ontology was nondeterministic, custom data ranges were not loaded correctly in some
    316 bytes (39 words) - 17:25, March 4, 2010
  • ChangeAnalysisTab
    ...nagement plugin. Changes and annotations can be explored based on authors, ontology terms, and visualized with respect to the life cycle of the project. ...odes and two authors are connected if at some point they modified the same ontology entity. This represents a social dependency network between the various aut
    2 KB (336 words) - 09:33, May 19, 2010
  • Protege 3.4.4 Release Notes
    * Added an ontology containing a large number of SQWRL queries to the set of pre-installed exam ...agement plug-in. Changes and annotations can be explored based on authors, ontology terms, and visualized with respect to the life cycle of the project.
    2 KB (309 words) - 17:03, April 27, 2011
  • Loading A DatabaseProject
    ...page describes how you can access programmatically (add, query, modify) an ontology stored in one of the Protege 4 database backends. There are currently 2 bac We will give some examples of useful code for accessing the database ontology api. There is now a [http://smi-protege.stanford.edu/repos/protege/protege
    10 KB (1,180 words) - 22:41, September 30, 2011
  • OntoGraf
    ...s layouts are supported for automatically organizing the structure of your ontology. Different relationships are supported: subclass, individual, domain/range ** Interactive graph-based visualization of the ontology terms.
    4 KB (581 words) - 16:43, January 18, 2013
  • Workflow ontology
    = The Workflow ontology = ...tion of the <code>Workflow</code> class (or subclass) in the ontology. The ontology captures the structure of the workflow - using classes, and a specific work
    3 KB (358 words) - 15:36, May 3, 2010
  • ProtegeOWL API Programmers Guide
    The Protege-OWL API is an open-source Java library for the Web Ontology Language (OWL) and RDF(S). The API provides classes and methods to load and The Protege-OWL API is an open-source Java library for the Web Ontology Language (OWL) and RDF(S). The API provides classes and methods to load and
    7 KB (956 words) - 12:25, July 8, 2010
  • Protege 4.1 Beta Release Notes
    ...Manchester OWL Syntax is now discouraged as a format for saving the entire ontology as certain axioms cannot be represented in this format and are lost during * Fixed the ontology reload feature.
    12 KB (1,789 words) - 17:24, April 27, 2011
  • WebProtegeLayoutConfig
    ...a predefined tab in the user interface, use the '''Add tab''' menu in the ontology toolbar (top right corner). To add portlets to a tab, use the menu '''Add c <name>edu.stanford.bmir.protege.web.client.ui.ontology.classes.ClassesTab</name>
    16 KB (2,302 words) - 15:30, February 27, 2014
  • PropertyFormPortlet
    * '''externalreference''' - widget to create a reference to an external ontology or terminology stored in BioPortal Below is an example from the Newspaper ontology:
    11 KB (1,324 words) - 17:13, November 30, 2016
  • DISCOWordSpaces
    languages and domains. DISCO Word Spaces helps at ontology building by suggesting similar and related words.
    4 KB (714 words) - 23:17, June 18, 2010
  • Protege 5 Development Environment
    ...ients (such as the desktop application) to browse and edit concurrently an ontology stored on a Protege 5 server. ...onedOntologyDocument are sufficient to do many operations on a checked out ontology including update, commit and save.
    18 KB (2,657 words) - 14:30, April 25, 2017
  • BuildingSemanticWebApplications
    ...the Semantic Web, perform queries on them, add or edit resources from the ontology, classify instances and classes, and write out resulting ontologies to a fi ...ve, the application has hard-coded behavior that depends on the travel.owl ontology, which contains classes like '''Activity''' and '''Destination'''. The app
    20 KB (2,308 words) - 17:14, June 30, 2010
  • ProgrammingWithProtegeOWL
    ...instances of a certain class (the '''Destination''' class from the travel ontology) and want to easily allow users to add new instances. Such a component coul //for the travel.owl ontology. Example:
    19 KB (2,809 words) - 12:54, July 1, 2010
  • SOVA
    ...s a Protege plugin to full ontology visualization. Finally we can show all ontology's elements: classes, individuals, properties, anonymous classes and relatio ==Simple Ontology Visualization API==
    6 KB (880 words) - 03:54, April 14, 2016
  • ProtegeOWL API Advanced Topics
    ...g code iterates through all user-defined named classes in the "travel.owl" ontology and prints their instances: //for the travel.owl ontology. If you do this, it is more robust
    13 KB (1,845 words) - 12:40, February 15, 2011
  • ProtegeOWL API Basics
    ..., which provides access to the top-level container of the resources in the ontology. You can use OWLModel to create, query, and delete resources of various typ ...odels, also from existing OWL files. For example, you can load an existing ontology from the web using
    24 KB (3,148 words) - 13:26, November 21, 2010
  • WebProtegeNotifications
    ...es between two types of changes - '''ontology changes and note changes'''. Ontology changes are additions to trees, or changes in properties. Note changes are ...notification period here. WebProtege will inform you of any changes to the ontology (not related to notes) on your watched entities or branches after this peri
    2 KB (352 words) - 16:31, July 15, 2010
  • Protege 3.4.5 Release Notes
    * Added new options to the Change menu (under Change | Clean Up Changes Ontology...): * Added a column in the Change History table to display the ontology entity on which the change occurred.
    3 KB (388 words) - 17:02, April 27, 2011
  • Pr4 UG co
    for codification of [[{{#var:G}}Ontology|ontologies]]. of an [[{{#var:G}}OWL|OWL]] [[{{#var:G}}Ontology|ontology]]. ...
    851 bytes (121 words) - 13:54, July 27, 2010
  • Pr4 UG co Annotation
    of an [[{{#var:G}}OWL|OWL]] [[{{#var:G}}Ontology|ontology]]. Although some annotations are specific to a given ontology,
    2 KB (263 words) - 13:55, July 27, 2010
  • Pr4 UG co Ontology
    == Ontology == An [[{{#var:G}}Ontology|ontology]] is a formally-defined vocabulary
    2 KB (328 words) - 13:55, July 27, 2010
  • Pr4 UG ex
    This chapter describes assorted example [[{{#var:G}}Ontology|ontologies]]. === [[Pr4_UG_ex_Pizza|Pizza Ontology]] ===
    347 bytes (50 words) - 13:55, July 27, 2010
  • Pr4 UG ex Pizza
    == Pizza Ontology == The Pizza [[{{#var:G}}Ontology|ontology]]
    1 KB (228 words) - 14:11, December 21, 2017
  • Pr4 UG h2
    [{{#var:wp}}/Web_Ontology_Language Web Ontology Language] (OWL), === [[Pr4_UG_h2_On_Create|Ontology Creation]] ===
    1 KB (206 words) - 13:55, July 27, 2010
  • Pr4 UG h2 En Name
    [{{#var:wp}}/Web_Ontology_Language Web Ontology Language] (OWL), If the entire ontology is tied to the same base URI,
    6 KB (1,036 words) - 13:55, July 27, 2010
  • Pr4 UG mi
    other ontology editors and tools for knowledge management. you can cause Protege 4 to create or open (and load) an ontology. ...
    3 KB (393 words) - 13:56, July 27, 2010
  • Pr4 UG mi Conventions
    <tr><td width=25><tt>On</tt></td><td>Ontology</td></tr> [[Pr4_UG_co_Ontology|Ontology page]]
    5 KB (857 words) - 13:56, July 27, 2010
  • Pr4 UG mi Glossary
    [[#Ontology |Ontology]], In the Pizza Ontology,
    79 KB (9,466 words) - 13:04, February 25, 2011
  • Pr4 UG mi Introduction
    on topics such as ontology creation and the OWL dialects, such as the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
    4 KB (723 words) - 13:57, July 27, 2010
  • Pr4 UG mi Outline
    [[Pr4_UG_co_Ontology |Ontology]] [[Pr4_UG_rp_Tab_Sub_Onto |Sub Ontology]],
    7 KB (980 words) - 13:57, July 27, 2010
  • Pr4 UG mi Page List
    2 [[Pr4_UG_co_Ontology | Ontology ]]<br> 2 [[Pr4_UG_ex_Pizza | Pizza Ontology ]]<br>
    17 KB (1,759 words) - 13:57, July 27, 2010
  • Pr4 UG mi Resources
    Chapter 6 (What Do You Mean, "Ontology"?) * [{{#var:wp}}/Ontology Ontology] (WP)
    5 KB (708 words) - 13:58, July 27, 2010
  • Pr4 UG mi Selection
    other ontology editors and tools for knowledge management. === Is an ontology really what I need? ===
    4 KB (583 words) - 11:02, July 28, 2010
  • Pr4 UG mi Startup
    or open (and load) an [[{{#var:G}}Ontology|ontology]]. === Create new OWL Ontology ===
    2 KB (343 words) - 13:58, July 27, 2010
  • Pr4 UG rm
    ...{#var:G}}Menu|menu]] is used to access {{#var:Pr4}}'s [[{{#var:G}}Ontology|ontology]]-[[{{#var:G}}Refactoring|refactoring]] facilities. ...
    2 KB (265 words) - 18:27, February 25, 2011
  • Pr4 UG rm Edit
    remove the assertion from the ontology. containing all of the individuals in the ontology.
    3 KB (473 words) - 12:10, February 25, 2011
  • Pr4 UG rm File
    Create a new ontology in the current or new (if need be) workspace. Open an existing ontology (and its imports)
    3 KB (462 words) - 12:11, February 25, 2011
  • Pr4 UG rm Refactor
    [[{{#var:G}}Ontology|ontology]]-[[{{#var:G}}Refactoring|refactoring]] facilities. ==== Change ontology URI... ====
    3 KB (416 words) - 14:00, July 27, 2010
  • Pr4 UG rm Tools
    that will be added to the ontology.
    710 bytes (99 words) - 14:01, July 27, 2010
  • Pr4 UG rm View
    ==== Show the imports closure of the active ontology ==== ...of the ontologies that are imported (directly or indirectly) by the active ontology.
    1 KB (197 words) - 18:15, February 25, 2011
  • Pr4 UG rm Window
    ===== Ontology views > ===== * [[Pr4_UG_rv_On_Prefixes |Ontology prefixes]]
    8 KB (1,150 words) - 18:01, February 25, 2011
  • Pr4 UG rp
    which includes several spreadsheet-style views of an ontology, (Ontology Pre-Processor Language). ...
    8 KB (1,234 words) - 14:01, July 27, 2010
  • Pr4 UG rp OWL API
    for the Web Ontology Language and RDF(S).
    774 bytes (126 words) - 14:02, July 27, 2010
  • Pr4 UG rp Tab Matrix
    which includes several spreadsheet-style views of an ontology,
    519 bytes (71 words) - 14:03, July 27, 2010
  • Pr4 UG rp Tab OPPL
    (Ontology Pre-Processing Language). to be applied in an OWL ontology.
    807 bytes (126 words) - 14:04, July 27, 2010
  • Pr4 UG rp Tab OWLViz
    enables class hierarchies in an OWL ontology
    717 bytes (105 words) - 14:04, July 27, 2010
  • Pr4 UG rp Tab Sub Onto
    == Tab - Sub Ontology == Sub Ontology [[{{#var:G}}Tab|tab]],
    1 KB (180 words) - 14:04, July 27, 2010
  • Pr4 UG rp View Bookmarks
    along with your ontology annotations for future reference.
    919 bytes (136 words) - 14:05, July 27, 2010
  • Pr4 UG rp View Cloud
    that lets users visualize an ontology Wondering about the "shape" of your ontology?
    1 KB (228 words) - 14:06, July 27, 2010
  • Pr4 UG rp View DL Learn
    ...ns definition and super class axioms based on existing instance data in an ontology <li>can handle cases where an ontology is already damaged,
    1 KB (181 words) - 14:06, July 27, 2010
  • Pr4 UG rp View OPL
    that allows users to experiment with Ontology Processing Language (OPL), as part of the Gene Ontology Next Generation (GONG) project.
    671 bytes (104 words) - 14:06, July 27, 2010
  • Pr4 UG rp View OWL2UML
    which represents the active [[{{#var:G}}OWL|OWL]] ontology [{{#var:wp}}/Ontology_Definition_Metamodel Ontology Definition Metamodel],
    753 bytes (113 words) - 14:07, July 27, 2010
  • Pr4 UG rp View OWLDoc
    Updates to the ontology are reflected immediately. The browser is also implemented as a standalone web ontology browser.
    2 KB (277 words) - 14:07, July 27, 2010
  • Pr4 UG rp View TerMine
    for rapidly bringing these terms into an OWL ontology.
    671 bytes (102 words) - 14:08, July 27, 2010
  • Pr4 UG rt
    === [[Pr4_UG_rt_Active_Ontology|Active Ontology]] === The Active Ontology [[{{#var:G}}Tab|tab]]
    2 KB (319 words) - 14:08, July 27, 2010
  • Pr4 UG rt Active Ontology
    == Active Ontology Tab == The Active Ontology [[{{#var:G}}Tab|tab]]
    1 KB (175 words) - 14:08, July 27, 2010
  • Pr4 UG rt Entities
    is the workhorse of the ontology editor. of the classes, properties, and individuals in an ontology.
    2 KB (364 words) - 14:09, July 27, 2010
  • Pr4 UG rt OntoGraf
    of your ontology.
    918 bytes (126 words) - 14:10, July 27, 2010
  • Pr4 UG rv
    === [[Pr4_UG_rv_On|Ontology Views]] === [[{{#var:G}}Ontology|ontology]] [[{{#var:G}}View|views]]
    2 KB (286 words) - 14:10, July 27, 2010
  • Pr4 UG rv Cl Annotations
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]], of the [[Pr4_UG_ex_Pizza|Pizza Ontology]],
    2 KB (320 words) - 14:12, July 27, 2010
  • Pr4 UG rv Cl Description
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
    2 KB (234 words) - 14:12, July 27, 2010
  • Pr4 UG rv Cl General class axioms
    * [[Pr4_UG_rt_Active_Ontology|Active Ontology]], in the "General Axioms" sub-tab <!-- ?(ToDo: add enabling content to Pizza ontology) -->
    943 bytes (148 words) - 14:12, July 27, 2010
  • Pr4 UG rv Cl OWLViz
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
    2 KB (249 words) - 14:13, July 27, 2010
  • Pr4 UG rv Cl Supcl hier
    added to the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
    1 KB (211 words) - 14:13, July 27, 2010
  • Pr4 UG rv Cl Supcl hier inf
    added to the [[Pr4_UG_ex_Pizza|Pizza Ontology]].
    2 KB (341 words) - 14:13, July 27, 2010
  • Pr4 UG rv Cl Usage
    of the [[Pr4_UG_ex_Pizza|Pizza Ontology]],
    2 KB (299 words) - 14:13, July 27, 2010
  • Pr4 UG rv Da Annotations
    <!-- ?(ToDo: add enabling content to Pizza ontology) -->
    1 KB (172 words) - 14:14, July 27, 2010
  • Pr4 UG rv Da Characteristics
    <!-- ?(ToDo: add enabling content to Pizza ontology) -->
    968 bytes (139 words) - 14:14, July 27, 2010
  • Pr4 UG rv Da Description
    <!-- ?(ToDo: add enabling content to Pizza ontology) -->
    1 KB (191 words) - 14:14, July 27, 2010
  • Pr4 UG rv Da Domains and ranges
    <!-- ?(ToDo: add enabling content to Pizza ontology) -->
    800 bytes (124 words) - 14:14, July 27, 2010
  • Pr4 UG rv Da Usage
    added to the [[Pr4_UG_ex_Pizza|Pizza Ontology]]. <!-- ?(ToDo: add enabling content to Pizza ontology) -->
    2 KB (326 words) - 14:14, July 27, 2010

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