Search by property

This page provides a simple browsing interface for finding entities described by a property and a named value. Other available search interfaces include the page property search, and the ask query builder.

List of results

• Advanced Annotation Search  + (A search function to find entities based on annotation data.)

• OBO Tools  + (A set of Protege extensions that make it easier for OBO ontology developers to navigate and edit OBO ontologies in OWL.)
• OBOConverter  + (A tab plugin that converts OBO format ontology files into OWL files using the OBO-to-OWL mapping created by NCBO.)
• Ontology Evaluation  + (A tab widget plug-in for ontology evaluation from a set of criteria.)
• OWLDiff  + (A tool for comparing OWL ontologies.)
• Annotation Search View  + (A view for searching entity annotations for a string or regular expression match. Can also be used with no string specified, just the annotation URI, for finding deprecated entities, or TODO items.)
• Annotation Template View  + (A view that can be configured to show a set of standard annotation fields for every class/property/individual. This makes it quicker to annotate as they are always in the same order, editable inline and easy to navigate.)
• ACE View  + (ACE View is an ontology and rule editor that uses Attempto Controlled English (ACE) in order to create, view and edit OWL 2 ontologies and SWRL rulesets.)
• AIFB  + (AIFB (Institute of Applied Informatics and Formal Description Methods) is an institute at the University of Karlsruhe.)
• Algernon  + (Algernon performs forward and backward rule-based processing of frame-based knowledge bases, and efficiently stores and retrieves information in ontologies and knowledge bases.)
• Sub Ontology Tab  + (Allows manipulation of axioms across ontologies.)
• HTML Chat  + (Allows users logged into a client-server version of Protege to chat in real time. Supports HTML-style editing (Bold, Italics, Underline, Strikethrough) along with dynamic hyperlink detections and internal link detections.)
• Protege-OWL Code Generator  + (Allows users to generate Java code from an ontology.)
• UMLS Tab  + (Allows users to search the National Library of Medicine's Unified Medical Language System (UMLS) and annotate Protege ontologies with terms, concept IDs, synonyms, relations, and other information from the UMLS.)
• Changes Tab  + (Allows users to track and annotate changes to Protege ontologies.)
• Alpen-Adria-Universität Klagenfurt  + (Alpen-Adria-Universität Klagenfurt (AAU) i …
  Alpen-Adria-Universität Klagenfurt (AAU) is a university located in the Austrian state of Carinthia, a meeting point of three cultures. AAU is Carinthia’s largest academic institution and a hub for the whole of the Alps-Adriatic region in terms of knowledge acquisition, exchange and transfer.
  wledge acquisition, exchange and transfer.)
• HypergraphDB Plugin and Server  + (An approach to Team Collaboration and Vers …
  An approach to Team Collaboration and Version Control for OWL2 Ontologies developed and used at Miami-Dade County. * Work with database backed ontologies * Track all changes * Collaborate on shared ontologies Supports share, checkout, commit, update, rollback, revert, view history, automatic Merge and conflict resolution. Versioning takes place above the OWLAPI layer (not text based). See a [http://sharegov.org/protegehgdb/HGOWLScreencast3.mp4 5 min Screencast here(HQ)] or [https://www.dropbox.com/s/d3utn88ow8ywqf3/HGOWL%20Screencast3.mp4 here(LQ)]. Homepage: http://sharegov.org/#!../protegehgdb/owltools.html
  haregov.org/#!../protegehgdb/owltools.html)
• Cardinality View  + (An experimental alternative to the conditions widget that shows restrictions in relation to their cardinality.)
• Search API  + (Augmented search API that implements a number of ways to search an in-memory frame-based Protege knowledge base.)
• OWL2UML  + (Automatically generates UML diagram which represents active OWL ontology using OMG's Ontology Definition Metamodel. The plugin has grown into new project called OWLGrEd. Please find out more at http://owlgred.lumii.lv/.)
• B2i Healthcare  + (B2i Healthcare delivers innovative solutions that simplify complex problems in healthcare information exchange.)
• The University Of Manchester  + (Britain's largest single-site university with a proud history of achievement and an ambitious agenda for the future.)
• CHISEL  + (CHISEL stands for Computer-Human Interaction and Software Engineering lab and includes a group of interdisciplinary researchers with diverse backgrounds based in the Department of Computer Science at the University of Victoria.)
• MetaAnalysis  + (Calculates various metadata for ontologies and facilitates the export of that metadata to the Ontology Medata Vocabulary.)
• Collaborative Protege  + (Collaborative Protege is an extension of the existing Protege system that supports collaborative ontology editing as well as annotation of both ontology components and ontology changes.)
• CompGuide Editor  + (CompGuide Editor is a tool used for the ac …
  CompGuide Editor is a tool used for the acquisition of Computer-Interpretable Guidelines in the CompGuide model for Clinical Practice Guidelines that also allows the editing of previously encoded guidelines. The Editor guides the users throughout the process of guideline encoding and does not require prociency in any programming language.
  ire prociency in any programming language.)
• RDF Backend  + (Create, import, and save RDF(S) files. Please note that this back-end was developed specifically for frame-based ontologies (not OWL).)
• OWLDoc  + (Creates a bundle of (mostly) static HTML pages for publishing to the Web or distributing to colleagues.)
• PromptViz  + (Creates visual representations of the differences between two versions of an ontology.)
• DISCOWordSpaces  + (DISCO Word Spaces is a tab widget for retr …
  DISCO Word Spaces is a tab widget for retrieving semantically similar words and collocations for a query word. The similarities have been computed on the basis of large text corpora for different languages and domains. DISCO Word Spaces helps at ontology building by suggesting similar and related words.
  g by suggesting similar and related words.)
• DroolsTab  + (DROOLS BASED SPATIAL SCENARIO SIMULATION P …
  DROOLS BASED SPATIAL SCENARIO SIMULATION PLUG-IN The DroolsTab uses the open source geo-information system Java library [http://openmap-java.org/ OpenMap] and the open source Java RETE rule engine [https://www.drools.org/ Drools] to facilitate visual authoring of complex spatial process simulation scenarios and general rule-based authoring. The [http://groovy-lang.org/ Groovy] and [http://clojure.org Clojure] languages can be used for authoring auxiliary pieces of code and scripts. The distribution includes several demos of spatial simulation in the sea, air, and ground environments, including one example using Edvin Boehn's [http://code.google.com/p/kmlframework/ KML Framework].
  google.com/p/kmlframework/ KML Framework].)
• DataMaster  + (DataMaster is a Protege plug-in for importing schema structure and data from relational databases into Protege.)
• ProtegeDocgen  + (Docgen plugin for (frame-based) Protege provides a quick export of all the content of an ontology (classes, instances and documentation) in various formats (html, pdf, fo...).)
• Bookmarks  + (Drag and drop classes and properties into the bookmark view to make them accessible at any time.)
• ELK  + (ELK is a free and open source reasoner for the lightweight ontology language OWL 2 EL.)
• Protege Wizards  + (Easier and faster creation of knowledge bases through wizards supporting task-oriented development.)
• EasyDB  + (EasyDB is a Protege tab plug-in that allow …
  EasyDB is a Protege tab plug-in that allows for easy exporting and importing of a Protege ontology. This plug-in also comes with a relationship viewer which can be used to quickly asses relationships between instances in the ontology. The ontology is stored using the Jena database storage schema. This was selected for its support of SWRL rules, which all other database storage mechanisms investigated did not support.
  e mechanisms investigated did not support.)
• OWLViz  + (Enables class hierarchies in an OWL ontology to be viewed and incrementally navigated, allowing comparison of the asserted class hierarchy and the inferred class hierarchy.)
• OWLPropViz  + (Enables graphical presentation of OWL object properties. Users can select the property or properties to be visualized in the graph. He can choose if the class-axioms "is-a", "disjoint-with" and "equivalent-to" should also be shown.)
• Protege Axiom Language (PAL) Tabs  + (Express constraints about a knowledge base and make logical queries about the contents of a knowledge base)
• EZPal  + (Facilitate acquisition of Protege Axiom Language (PAL) based constraints without having to understand the language itself.)
• OntoLing  + (Facilitates linguistic enrichment of ontologies and includes an interface for WordNet (from 1.6 to 2.1) and DICT dictionaries. Check the [http://art.uniroma2.it/ontoling/ home page] for further details)
• FuzzyOWL2  + (FuzzyOWL2 (Fuzzy OWL 2) is a plugin for Protege 4.1 that allows users to edit, save Fuzzy OWL 2 ontologies, and submit queries to the underlying inference engine FuzzyDL.)
• Genome Canada  + (Genome Canada - a not-for-profit organizat …
  Genome Canada - a not-for-profit organization established in February 2000 - was given a mandate by the Government of Canada to develop and implement a national strategy for supporting large-scale genomics and proteomics research projects, for the benefit of all Canadians.
  rojects, for the benefit of all Canadians.)
• HermiT  + (HermiT is a reasoner for ontologies written using the Web Ontology Language (OWL). Given an OWL file, HermiT can determine whether or not the ontology is consistent, identify subsumption relationships between classes, and much more.)
• Hewett Research  + (Hewett Research is a consulting firm specializing in rapid construction of ontologies and knowledge bases.)
• HyperMod  + (HyperMod is a module extraction tool based on reachability in hypergraphs. These modules are similar to syntactic locality based modules but has the potential of being substantially smaller.)
• IRIS  + (IRIS is a wrapper, which is developed as a …
  IRIS is a wrapper, which is developed as a Protege plug-in, to solve an increasingly important problem: extracting information from the product descriptions provided by online sources and structuring this information so that is sharable among business entities, software agents and search engines. Extracted product information is presented in a GoodRelations-compliant ontology. IRIS also automatically marks up your products using RDFa or Microdata. Creating GoodRelations snippets in RDFa or Microdata using the product information extracted from Web is a business value, especially when you consider most of the popular search engines recommend the use of these standards to provide rich site data for their index.
  to provide rich site data for their index.)
• Excel Import  + (Import content and generate classes from Excel or CSV files. Provide rules to create restrictions between columns. Find it under the Tabs menu.)
• Infomed  + (Infomed es la red de personas e instituciones que trabajan para mejorar el acceso a la información y, por lo tanto, mejorar la salud de los cubanos y de los pueblos del mundo)
• Expert System Shell r4f-pro  + (Integrated Development Environment for ret …
  Integrated Development Environment for rete4frames rule engine and expert system shell based on Protege-3.5 ontology editor supplemented with visual creation of algorithms. It combines two well-known paradigms of software development: algorithms for strictly defined processes and rules for fuzzy, fragmentarily defined processes and phenomenons.
  ntarily defined processes and phenomenons.)
• IDESSP  + (Integrated development environment for vis …
  Integrated development environment for visual creation and simulation of spatial processes. Based on ontology editor Protege-frames, GIS library OpenMap and rule engine and expert system shell rete4frames. Uses concept of "Scenario" for describing spatial processes and programming language Clojure for executive parts of rules and auxilliary scripts. Includes general IDE for Clojure.
  scripts. Includes general IDE for Clojure.)
• JSave  + (JSave can be used to generate Java class definition stubs for Protege-Frames classes.)
• Jambalaya  + (Jambalaya is a Protege plug-in that uses Shrimp to visualize Protege-Frames and Protege-OWL ontologies.)
• JessTab  + (JessTab provides a Jess console window where you can interact with Jess while running Protégé.)
• Logical Difference Vizualiser (LogDiffViz)  + (Logical Difference Visualizer (LogDiffViz) is a plugin for Protege-OWL)
• PROMPT  + (Manage multiple ontologies, create a mapping between ontologies, merge separate ontologies to create a single coherent ontology, extract a part of an ontology, and move frames from an included to an including project.)
• Mastro DL-Lite Reasoner  + (Mastro is an Ontology-Based Data Access (O …
  Mastro is an Ontology-Based Data Access (OBDA) management system. Ontologies in Mastro are specified through languages belonging to the DL-Lite family of lightweight Description Logics. The ontology is connected to external relational data management or data federation systems through a mapping establishing a semantic relation between SQL queries issued over the underlying databases and elements of the ontology. To access data, users can specify SPARQL queries over the ontology and make use of the query answering services provided by Mastro.
  ery answering services provided by Mastro.)
• NCI Inc  + (NCI builds transparent knowledge organization supported by associated ontological technologies and intelligence analysis processes that make innovation a daily way of life.)
• NaturalOWL  + (NaturalOWL generates descriptions of individuals and classes from OWL ontologies that have been annotated with linguistic and user modeling resources expressed in RDF. Currently it supports English and Greek.)
• NavigOWL  + (NavigOWL is a visualization tool which is …
  NavigOWL is a visualization tool which is specially designed to explore the semantic nets a.k.a Ontologies. The Tool is enriched with appealing graph layouts that can be applied over the semantic net in order to understand the structure of Ontologies easily and it facilitates the user to build mental map in more clear and consistent view of ontology graph. The tool supports rdf and owl Ontologies to visualize them.
  rdf and owl Ontologies to visualize them.)
• OntoSpace  + (Next Generation Software)
• NoHR  + (NoHR (Nova Hybrid Reasoner) is a plug-in f …
  NoHR (Nova Hybrid Reasoner) is a plug-in for Protégé that allows its users to query knowledge bases composed of an ontology in OWL 2 EL or OWL 2 QL (from version 2.0.0 on) and a set of Reasoning Rules. Using a top-down reasoning approach, which means that only the part of the ontology and rules that is relevant for the query is actually evaluated, NoHR combines the capabilities of ELK and a dedicated direct translation for OWL 2 EL and OWL 2 QL respectively with the rule engine XSB Prolog to deliver very fast interactive response times.
  iver very fast interactive response times.)
• OBDA Systems  + (OBDA Systems proposes state-of-the-art sol …
  OBDA Systems proposes state-of-the-art solutions based on the most recent innovations in the field of semantic technologies to provide its clients with a direct and effective means for extracting key data from large and complex datasets. The foundation of these solutions is representation and reasoning through ontology modelling.
  and reasoning through ontology modelling.)
• OWL2Query  + (OWL2Query is a conjunctive query and metaq …
  OWL2Query is a conjunctive query and metaquery engine (for SPARQL-DL and negation as failure), and visualization plug-in. It facilitates creation of queries using SPARQL or intuitive graph-based syntax, and evaluates them using any OWL API-compliant reasoner.
  them using any OWL API-compliant reasoner.)
• OWL2ToRDB  + (OWL2ToRDB is a Protégé plugin for transforming OWL 2 ontology into relational database.)
• OntoBase  + (OntoBase can be connected to any relational database- providing access to data, virtually without any programming)
• OntoDebug  + (OntoDebug is a free and open-source interactive ontology debugger plugin for Protégé to resolve and repair inconsistent and incoherent ontologies.)
• OntoGraf  + (OntoGraf gives support for interactively n …
  OntoGraf gives support for interactively navigating the relationships of your OWL ontologies. Various layouts are supported for automatically organizing the structure of your ontology. Different relationships are supported: subclass, individual, domain/range object properties, and equivalence. Relationships and node types can be filtered to help you create the view you desire.
  ed to help you create the view you desire.)
• OWLAx  + (Ontology Design Pattern Plugin for Protege. It gives the option to sketch the ontology model within protege and automatically generate axioms from the figure.)
• Ontop  + (Ontop is a platform to query databases as …
  Ontop is a platform to query databases as Virtual RDF Graphs using SPARQL. It's extremely fast and is packed with features. Ontop is an open-source Ontology Based Data Access (OBDA) system that allows for querying relational data sources through a conceptual representation of the domain of interest, provided in terms of an ontology, to which the data sources are mapped. Key features of Ontop are its solid theoretical foundations, a virtual approach to OBDA that avoids materializing triples and that is implemented through query rewriting techniques, extensive optimizations exploiting all elements of the OBDA architecture, its compliance to all relevant W3C recommendations (including SPARQL queries, R2RML mappings, and OWL 2 QL and RDFS ontologies), and its support for all major relational databases.
  upport for all major relational databases.)
• Owl2Cool  + (Owl2Cool is a tab-widget which provides an …
  Owl2Cool is a tab-widget which provides an interface to Protege users for transorming a given OWL ontology to the object-oriented language COOL. After the transformation it produces in the given path a .clp file which can then be loaded to CLIPS for programming with production rules.
  IPS for programming with production rules.)
• Protege Client-Server  + (Protege Client-Server is an extension of [[Protege]] that allows either the [[Protege-Frames]] or [[Protege-OWL]] editors to be used in client-server mode.)
• OpenMap Tab Plugin  + (Protege-Frames plug-in for visualizing geodata and creating GIS applications Uses GIS library OpenMap (http://openmap-java.org/))
• Protege  + (Protégé is a free, open-source platform that provides a growing user community with a suite of tools to construct domain models and knowledge-based applications with ontologies.)
• OntoTweet  + (Provides Twitter timeline and search integration directly into Protege.)
• InstanceTree  + (Provides a tree view of frames referenced directly or indirectly by a Protege instance.)
• Outline and Existential Tree Views  + (Provides alternatives to the subsumption hierarchy view.)
• SPARQL Query  + (Provides support for composing and executing SPARQL queries from within Protege's user interface.)
• Taxonomy Cut+Paste  + (Provides two quick ways to extract parts of a class hierarchy into text form for papers, presentations, etc.)
• DL Query  + (Quickly test definitions of classes to see that they subsume the appropriate subclasses. Or check for class membership of arbitrary descriptions without having to create named class placeholders.)
• Racer Systems  + (Racer Systems GmbH & Co. KG was founde …
  Racer Systems GmbH & Co. KG was founded in 2004 by Ralf Möller, Volker Haarslev, Michael Wessel and Kay Hidde in Hamburg, Germany, to give the "Racer System" a home. Since then we developed RacerPro as a OWL/RDF reasoner and inference server for the semantic web to be used in research as well as commercial projects. While licenses are available for purchase we support the education at degree-granting organizations such as universities and schools by granting free licenses to individuals (students, teachers, lecturers). To support the huge and vital community of Protégé users we also give away RacerPro for Protégé (aka "RacerProTG") and the corresponding Protégé plugin for free. For more information please consult our web site or contact us.
  ion please consult our web site or contact us.)
• SOVA  + (SOVA (Simple Ontology Visualization API) is a Protege plugin to full ontology visualization. Finally we can show all ontology's elements: classes, individuals, properties, anonymous classes and relations between these object.)
• SRI International  + (SRI is an independent, nonprofit research institute with headquarters in Menlo Park, California, and branch offices in more than 20 locations worldwide.)
• ROWLTab  + (SWRL Rule to OWL Axiom converter. Convert SWRL rule to OWL Axiom.)
• SWRL-IQ  + (SWRL-IQ (Semantic Web Rule Language Inference and Query tool) is a plugin for Protege 3.4.x that allows users to edit, save, and submit queries to an underlying inference engine based on XSB Prolog.)
• NUST School of Electrical Engineering and Computer Science  + (School of Electrical Engineering and Computer Science (SEECS), National University of Science and Technology (NUST). Located in Islamabad, Pakistan.)
• String Search Tab  + (Search all values of type String in a knowledge base. Search includes classes, slots, instances, slot values, and metaclasses.)
• AKSW research group, University of Leipzig  + (Semantic Web research group at the University of Leipzig.)
• Matrix  + (Several spreadsheet-style views of an ontology, including existential fillers, individual relationships, and an object properties view.)
• Snorocket  + (Snorocket for Protege is a Java implementa …
  Snorocket for Protege is a Java implementation of the polynomial classification algorithm described by Baader et al in [http://lat.inf.tu-dresden.de/research/papers-2005.html#BaaderBrandtLutz-IJCAI-05 Pushing the EL Envelope] and packaged for use as a reasoner in Protege. Snorocket is capable of classifying SNOMED CT in under 1 minute.
  f classifying SNOMED CT in under 1 minute.)
• Snow Owl  + (Snow Owl is a free [http://www.b2international.com/portal/snow-owl SNOMED CT browser] and authoring tool integrating Protégé.)
• BeanshellView  + (Some coding doesn't justify setting up an …
  Some coding doesn't justify setting up an entire Java build environment and/or requires immediate feedback. The Beanshell view allows programmatic access from within Protege for querying and manipulating ontologies, or even interacting with the UI. For more information see the Beanshell website.
  ore information see the Beanshell website.)
• EditorPane  + (Supports HTML text and also has a dynamic hyperlink detector for internal and external links.)
• EditorPanePlain  + (Supports HTML text and has dynamic hyperlink detection. This plug-in does not always write HTML to your knowledge base. You can use it when you want your knowledge base to contain plain text, but display hyperlinks in the user interface.)
• PSM Librarian  + (Supports users in building knowledge-based applications out of reusable knowledge components known as Problem-Solving Methods (PSMs).)
• SKOS Editor  + (Supports viewing and editing of Simple Knowledge Organization System (SKOS) vocabularies.)
• Supélec  + (Supélec, short for "Ecole Supérieur d'Elec …
  Supélec, short for "Ecole Supérieur d'Electricité" is one of France's restigious Grandes Ecoles, one of the top in its field of electrical and computer engineering. Supélec was founded in Paris in 1894. Today the school is organised in a three-campus network, located in Gif-sur-Yvette on the outskirts of Paris, Rennes in Brittany and Metz in Lorraine. The school has 3 main missions : initial training of engineers, research and development, and professional training.
  nd development, and professional training.)
• TGViz  + (TGVizTab allows users to visualize Protege ontologies using the TouchGraph library.)
• Bayesian Network Tab (BNTab)  + (The BNTab plug-in enables users to efficiently generate Bayesian networks based on existing ontologies. The Norsys Netica API is required.)
• BioPortal Import Plugin  + (The BioPortal Import Plugin allows users t …
  The BioPortal Import Plugin allows users to import classes from external ontologies stored in the BioPortal ontology repository. The user can import entire trees of classes with a desired depth and choose which properties to import for each class. This plugin works with Protege 3.x releases, not Protege 4.x.
  ith Protege 3.x releases, not Protege 4.x.)
• BioPortal Reference Plugin  + (The BioPortal Reference Plugin allows the user to insert into the ontology references to external ontologies and terminologies stored in BioPortal.)
• The CO-ODE Project  + (The CO-ODE project aims to build authoring tools and infrastructure that make ontology engineering easier.)
• DL-Learner  + (The DL-Learner plugin allows learning equivalence and super class axioms based on the instance data in the ontologies loaded in Protégé.)
• OOGIS RL  + (The Geoinformation Systems Research Laboratory is a department of the St. Petersburg Institute for Informatics and Automation of the Russian Academy of Sciences.)
• HERAKLES  + (The HERAKLES plug-in provides an extension to Protégé 4 to use the HERAKLES reasoning broker framework.)
• User:Filas1991  + (The Intelligent Systems research group (Un …
  The Intelligent Systems research group (University of Minho ISLab) has the vision that intelligent solutions should focus on being useful to the environment where they are integrated. Thus, Intelligent Systems are seen as a way of promoting innovation and providing solutions, to society and institutions, in real domains. Currently, the group engages in projects of various kinds, from Computational Sustainability to Ambient Intelligence, in which well-being and sustainability are areas that stand out.
  d sustainability are areas that stand out.)
• Filas1991  + (The Intelligent Systems research group (UM …
  The Intelligent Systems research group (UMinho - ISLab) has the vision that intelligent solutions should focus on being useful to the environment where they are integrated. Thus, Intelligent Systems are seen as a way of promoting innovation and providing solutions, to society and institutions, in real domains. Currently, the group engages in projects of various kinds, from Computational Sustainability to Ambient Intelligence, in which well-being and sustainability are areas that stand out.
  d sustainability are areas that stand out.)
• OPL Plugin  + (The OPL (Ontology Processing Language) transformation language has been designed as part of the GONG project. It has been adapted to work within Protege 4.x to test what further requirements are needed for ontology transforms.)
• OWL Lint  + (The OWL Lint framework is designed to be a flexible way to define and run tests against a set of OWL ontologies for quality control, debugging, best practices, and many other purposes.)
• OntoCheck  + (The OntoCheck P4 plugin allows to define c …
  The OntoCheck P4 plugin allows to define clean-up checks on a generated owl ontology - e.g. to be stored and carried out before each ontology release. Found test violations can be corrected to foster consistency in entity naming and meta-annotation. Once specified, check-constraints like name patterns can be stored and exchanged for later re-use. The plugin allows the user to specify checks on certain properties of an active ontology (OntoCheck) and allows for improvements (OntoCure) in the areas of a) Metadata completeness, e.g. via cardinality checks on mandatory and optional annotation properties b) Naming Conventions, e.g. via lexical analysis and labeling enforcement for representational units (RU) names and IDs. Thereby this plugin fosters lexical harmonization as e.g. demanded by the OBO Foundry Naming Conventions at http://www.obofoundry.org/wiki/index.php/Naming A paper describing OntoChecks functionalities in more detail can be found at http://www.ncbi.nlm.nih.gov/pubmed/23046606
  ttp://www.ncbi.nlm.nih.gov/pubmed/23046606)
• OntoViz  + (The OntoViz Tab allows you to visualize Protege ontologies with AT&T's highly sophisticated Graphviz visualization software.)
• Protege 4 Plugin for Oracle Database  + (The Oracle Spatial and Graph option for Oracle Database 12c now supports Protégé Desktop 4.3.)
• Protege-Frames  + (The Protege-Frames editor provides a full-fledged user interface and knowledge server to support users in constructing and storing frame-based domain ontologies, customizing data entry forms, and entering instance data.)
• Protege-OWL  + (The Protege-OWL editor is an extension of [[Protege]] that supports the Web Ontology Language (OWL).)
• RacerProTG  + (The RacerPro Plugin for Protégé offers reasoning functionality to Protégé 4.x. Once installed the plugin downloads a special but free version of the RacerPro inference server (aka "RacerProTG") and adds RacerPro to the "Reasoner" menu.)
• SADI Service plugin  + (The SADI plugin for Protege is a a collect …
  The SADI plugin for Protege is a a collection of views and tools, available in a single tab, that simplify the provision of SADI Semantic Web Services by integrating the service creation and deployment environment into the ontology design environment. This allows drag-n-drop editing and testing of SADI Service interfaces from the ontologies and knowledgebases displayed in Protege.
  s and knowledgebases displayed in Protege.)
• SWRLTab  + (The SWRLTab is a Protégé plugin that provi …
  The SWRLTab is a Protégé plugin that provides a development environment for working with SWRL rules and SQWRL queries. Documentation for the Protégé 5-based version can be found (here)[https://github.com/protegeproject/swrlapi/wiki]. Documentation for the Protégé 3-based version of the SWRLTab can be found (here)[http://protege.cim3.net/cgi-bin/wiki.pl?SWRLTab].
  protege.cim3.net/cgi-bin/wiki.pl?SWRLTab].)
• TerMine Plugin  + (The TerMine Plugin uses text mining tools to extract candidate terms from a corpus of text and provides an interface for rapidly bringing these terms into an OWL ontology.)
• UML Backend  + (The UML back-end plug-in provides an import and export mechanism between the Protege knowledge model and the object-oriented modeling language UML.)
• University of Oxford  + (The University of Oxford is a world-renowned university in the United Kingdom.)
• University of Southampton  + (The University of Southampton enjoys an international reputation for innovation and excellence in research. We have high calibre teaching staff and first-rate facilities.)
• VOWL  + (The VOWL plugin for Protégé (ProtégéVOWL) …
  The VOWL plugin for Protégé (ProtégéVOWL) implements the [http://vowl.visualdataweb.org Visual Notation for OWL Ontologies (VOWL)] to a large extent. VOWL provides graphical depictions for elements of the Web Ontology Language (OWL) that are combined to a force-directed graph layout representing the ontology.
  Note that the ProtégéVOWL does not implement all visual elements defined in the VOWL specification. A more complete implementation of VOWL is provided by the web application [http://vowl.visualdataweb.org/webvowl.html WebVOWL].
  p://vowl.visualdataweb.org/webvowl.html WebVOWL].</em>)
• XML Tab  + (The XML Tab enables users to import an XML document into Protege, creating a set of classes and instances in a knowledge base which correspond to the entries in the XML document.)
• OntologyBeanGenerator  + (The ontology bean generator plugin is a Pr …
  The ontology bean generator plugin is a Protégé Tab widget which generates java files representing an ontology that can be used with the JADE environment. With the beangenerator tool you can generate FIPA/JADE compliant ontologies from RDF(S), XML and Protégé projects. This plugin works with both Protégé frames and Protégé OWL ontologies.
  Protégé frames and Protégé OWL ontologies.)
• Ontology Generation Plugin (DOG4DAG)  + (The ontology generation plug-in includes * …
  The ontology generation plug-in includes * Generation of terms from natural language text (English or German) that can be retrieved from PubMed, the Web or from PDF documents * Domain-independent generation of natural language definitions * Discovery of siblings from existing terms with identical parent terms * Prediction of sub-class relationships * Automatic mapping of generated terms to existing ontologies using the BioPortal Web Service or the EBI Ontology Lookup Service
  Service or the EBI Ontology Lookup Service)
• ChangeAnalysisTab  + (The plugin provides different views for ex …
  The plugin provides different views for exploring the annotation/change ontology associated with a project that uses the Change Management plugin. Changes and annotations can be explored based on authors, ontology terms, and visualized with respect to the life cycle of the project.
  respect to the life cycle of the project.)
• MESAM  + (The protégé MESAM plugin is a semi-automatic tool for defining a consistant OWL merged model composed of a generic model, a specific model and mapping between them.)
• University of British Columbia  + (The university of British Columbia.)
• Individual properties contextual assertion  + (The view offers a more comfortable and adv …
  The view offers a more comfortable and advanced way to make individual properties assertions compared to the default Protégé "Property Assertions" view. The view is available from: Window -> Views -> Individual Views -> Properties contextual assertions.
  ws -> Properties contextual assertions.)
• PropertiesInDomainClass  + (The views show the data/object properties …
  The views show the data/object properties for which the domain is super-class to the selected OWL class, in other words all properties, such that selected class ⊆ domain(property). The views also allow to add new properties/sub-properties or delete existing ones. When adding a new property, its domain will be automatically set to the selected OWL class. It is advised to run a reasoner in order to obtain a more complete tree of the data/object properties. Both views are synchronized with the rest of the view. So if you click on one the of the properties, the rest of the related views will be updated. The views are available at: Windows -> Views -> Object Properties Views -> Object properties in Domain of class view Windows -> Views -> Data Properties Views -> Data properties in Domain of class view
  operties Views -> Data properties in Domain of class view)
• Instance Selection  + (This plug-in adds both navigation and expo …
  This plug-in adds both navigation and export features to Protege-Frames. It provides a tree view of the knowledge base as well as allows the selection of instances for data preparation and consequent export in several data mining workbench formats such as Weka and text.
  g workbench formats such as Weka and text.)
• Queries and Export Tab  + (This plug-in allows you to query knowledge-bases and export the results. An export button was added to the query-results window to allow for tabular export of selectable slot values of all found result-instances.)
• Watson Search Preview  + (This plug-in shows a preview of a search i …
  This plug-in shows a preview of a search in Watson. Whenever a class is selected, the Watson Search Plugin searches for that term and provides the top results. This is more a proof of concept or an example than a real plugin. If you are searching for something more powerful, see http://watson.kmi.open.ac.uk/editor_plugins.html.
  watson.kmi.open.ac.uk/editor_plugins.html.)
• XML2OWL  + (This plugin allows for the mapping of new XML data to an existing OWL ontology through Protege. Mappings are carried out according to user-provided rules, and result in new individuals and axioms in the ontology.)
• Protege-nrepl  + (This plugin enables fully programmatic acc …
  This plugin enables fully programmatic access and manipulation of the data structures that Protege is displaying. It does this by embedding an nREPL server launched using the language Clojure. nREPL clients (essentially any IDE capable for Clojure) can access this server to add or remove entities, change views or do anything else they desire. Although not intrinsically linked to it, Protege-NREPL was original written for use with the Tawny-OWL environment. By combining the two Protege can be used to visualize live the current state of an ontology written in Tawny-OWL
  state of an ontology written in Tawny-OWL)
• ProtégéLOV  + (This plugin goal is to help ontologists se …
  This plugin goal is to help ontologists searching for relevant vocabularies in the Linked Open Data (LOV) catalogue, for easing the development of ontologies by reusing existing vocabularies at low fine grained level. The tool helps to improve the modeling and reuse of ontologies used in the LOD cloud.
  reuse of ontologies used in the LOD cloud.)
• Change View  + (This view provides a very straightforward list of changesets and the axioms that have been added and removed.)
• ClojureTab  + (USEFUL TOOL FOR KNOWLEDGE PROCESSING IN PR …
  USEFUL TOOL FOR KNOWLEDGE PROCESSING IN PROTEGE. The ClojureTab uses the [http://clojure.org Clojure programming language] for simple programming in the Protege environment, on-the-fly debugging, and storing programs in Protege projects. Contains: 1. Integrated development environment for Clojure language (https://clojure.org/) 2. Protege API for Clojure language 3. Rule engine and Expert system shell rete4frames (https://github.com/rururu/rete4frames) 4. Algorithms visual development environment
  Algorithms visual development environment)
• Cloud Views  + (Visualize your ontology as a tag cloud (a set of related tags with corresponding weights).)
• XMI Backend  + (XMI is a standard format for metadata exch …
  XMI is a standard format for metadata exchange supported by OMG, the group that is responsible for standards such as UML, CORBA, and the Common Warehouse Metamodel. If you are a looking for alternative mechanisms to access Protege knowledge models (ontologies) from your application, data warehouse, or metadata repository, this back-end might be interesting for you.
  his back-end might be interesting for you.)
• RDB2ONT  + (automatic tool for creating ontology from database)