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- === The Protege Ontology Library is no longer being maintained. For biomedical ontologies, please vi286 bytes (40 words) - 11:40, February 14, 2022
- ...the concepts in your target ontology retain the metadata from the original ontology.<br /><br />1,016 bytes (151 words) - 12:44, April 23, 2008
- |VersionOf=Sub Ontology Tab267 bytes (31 words) - 18:40, August 12, 2008
- #REDIRECT [[Sub Ontology Tab 1.0.0]]36 bytes (4 words) - 08:56, April 12, 2008
- #REDIRECT [[Sub Ontology Tab 1.0.3]]36 bytes (4 words) - 11:02, April 16, 2008
- = The Workflow ontology = ...tion of the <code>Workflow</code> class (or subclass) in the ontology. The ontology captures the structure of the workflow - using classes, and a specific work3 KB (358 words) - 15:36, May 3, 2010
- == Ontology == An [[{{#var:G}}Ontology|ontology]] is a formally-defined vocabulary2 KB (328 words) - 13:55, July 27, 2010
- == Active Ontology Tab == The Active Ontology [[{{#var:G}}Tab|tab]]1 KB (175 words) - 14:08, July 27, 2010
- == Ontology - Ontology Metrics == for an [[{{#var:G}}Ontology|ontology]].902 bytes (135 words) - 14:21, July 27, 2010
- |Description=The ontology generation plug-in includes ...ed terms to existing ontologies using the BioPortal Web Service or the EBI Ontology Lookup Service1 KB (129 words) - 05:14, December 2, 2011
- |VersionOf=Ontology Generation Plugin (DOG4DAG) |Changelog=Added support for BioPortal ontology lookup services305 bytes (38 words) - 07:03, July 26, 2011
- |VersionOf=Ontology Generation Plugin (DOG4DAG)467 bytes (71 words) - 06:25, November 8, 2011
- |VersionOf=Ontology Generation Plugin (DOG4DAG) |Changelog=Bugfix: Switching between BioPortal and EBI OLS for ontology lookup355 bytes (43 words) - 05:16, December 2, 2011
- |Description=A tab widget plug-in for ontology evaluation from a set of criteria. |HomepageURL=http://code.google.com/p/ontology-evaluation/503 bytes (58 words) - 09:00, July 31, 2013
- |VersionOf=Ontology Evaluation |File=https://ontology-evaluation.googlecode.com/files/evaluation4.1.zip233 bytes (23 words) - 16:08, April 23, 2013
- |VersionOf=Ontology Evaluation |File=https://ontology-evaluation.googlecode.com/files/evaluation3.4.zip235 bytes (23 words) - 16:09, April 23, 2013
Page text matches
- ...:bold;">[[WebProtege|WebProtégé]] - a powerful collaborative ontology development environment for the Web </span>]] ...[[Protege4UserDocs|Protégé Desktop]] - a fully-fledged OWL 2 ontology editor for the desktops</span>]]5 KB (687 words) - 23:55, February 17, 2022
- The [[P4APIOverview|Protege API]] gives access to the ontology model and offers various utilities. ...5_Development_Environment|Setting up a development environment for the OWL Ontology Server]]4 KB (546 words) - 23:19, May 23, 2016
- ...rate ontologies to create a single coherent ontology, extract a part of an ontology, and move frames from an included to an including project. * '''compare''' versions of the same ontology5 KB (754 words) - 15:30, July 23, 2014
- * Picking a set of classes or instances to visualize part of an ontology To create a graph, select a class from your ontology in the Classes pane, click the "add class" button in the upper left "Config10 KB (1,576 words) - 08:51, July 19, 2017
- |Description=Enables class hierarchies in an OWL ontology to be viewed and incrementally navigated, allowing comparison of the assert ...otege-owl.html Protege-OWL editor]. It enables class hierarchies in an OWL Ontology to be viewed and incrementally navigated, allowing comparison of the assert4 KB (654 words) - 15:46, March 29, 2019
- If performing reasoning tasks after small ontology modifications,1 KB (182 words) - 09:26, January 14, 2016
- ...lug-in might be to import a database schema as classes or instances in the ontology which may be later used to dynamically query the content of the database us4 KB (576 words) - 01:38, July 11, 2014
- = Exporting an ontology to XML = = Importing instances from XML into an ontology =4 KB (565 words) - 13:58, February 14, 2014
- ...including rule definition, slot value set, get and delete, frame deletion, ontology traversal, and more. It allows nearly complete access to the Protege API, a2 KB (224 words) - 12:44, September 14, 2007
- === The Protege Ontology Library is no longer being maintained. For biomedical ontologies, please vi286 bytes (40 words) - 11:40, February 14, 2022
- ...ive ontology editing as well as annotation of both ontology components and ontology changes. ..."color:#555555;font-weight:bold;">The format of the Changes and Annotation ontology (ChAO) has changed in Protege 3.4.2 release. If have an existing ChAO proje24 KB (3,748 words) - 13:05, February 12, 2011
- |Description=A tab plugin that converts OBO format ontology files into OWL files using the OBO-to-OWL mapping created by NCBO.1 KB (141 words) - 12:43, February 24, 2009
- ...CO-ODE project aims to build authoring tools and infrastructure that make ontology engineering easier.206 bytes (28 words) - 14:12, August 16, 2007
- ...ontology101.html Ontology Development 101] guide to building a frame-based ontology1 KB (166 words) - 17:21, March 16, 2012
- ...he Protege-OWL editor is an extension of [[Protege]] that supports the Web Ontology Language (OWL).1 KB (162 words) - 15:42, August 8, 2017
- * [[Collaborative_Protege|Collaborative Protege]] - support for collaborative ontology development; adding notes to classes, change tracking, chat, etc. ...Tab|Change tracking]] - track and record the changes the users make in the ontology4 KB (472 words) - 14:04, May 23, 2016
- ...able for projects in which multiple users need to access and edit the same ontology.''' ...able for projects in which multiple users need to access and edit the same ontology.5 KB (745 words) - 14:05, January 24, 2012
- = How to store the Changes and Annotations ontology in a database = If you have an existing changes and annotation ontology (ChAO) associated to your project, then it is probably stored as RDF(S) fil7 KB (1,066 words) - 14:11, December 16, 2009
- ...searching the UMLS from within Protege, and directly annotating a Protege ontology with information from the UMLS. New instances and classes can be created i * Directly annotating an ontology in Protege with information from the remote knowledge base11 KB (1,843 words) - 16:42, November 5, 2008
- == Ontology Development == .../ontology101.html Ontology Development 101: A Guide to creating your first ontology]904 bytes (120 words) - 14:26, October 4, 2013
- * [[Importing_Ontologies_in_P41|OWL Imports]] - modular ontology support in OWL and Protege * [[Protege4OWLDiff|Protege OWL Diff]] - compare two versions of an ontology4 KB (564 words) - 15:19, December 22, 2021
- This page contains instructions for getting started with the Protege Desktop Ontology Editor. Applies to versions 4, 5 and newer. Protege is an OWL ontology development environment. This quick start guide forms part of the [[Protege10 KB (1,586 words) - 20:25, May 23, 2016
- For ontology developers the choice is harder as the tasks that any given user/applicatio ...yle="border-bottom:1px dashed #BC8F8F;" | Multiple users can edit the same ontology using the [[Protege_Client-Server_Tutorial|client-server version of Protege8 KB (1,229 words) - 14:25, August 8, 2017
- This plugin monitors changes made to an ontology and displays a summary of the changes in a nice way to the user. When we ...d not function correclty. The knowledge base listeners that monitored the ontology for changes ran on each of the clients.3 KB (442 words) - 11:50, March 19, 2010
- ** [[ImportUsingProtegeOWLAPI|How to import an ontology using the Protege-OWL API]] ** [[LoadOWLOntologyFromDB|How to load a Protege-OWL ontology from a Protege database using the API]]4 KB (537 words) - 23:07, May 23, 2016
- ...s, property, or individual will be displayed as you browse. Updates to the ontology are reflected immediately. ...emented as a standalone [http://www.co-ode.org/downloads/owldoc-server web ontology browser].<br /><br />2 KB (247 words) - 11:25, May 8, 2012
- |Description=Several spreadsheet-style views of an ontology, including existential fillers, individual relationships, and an object pro The Matrix tab/views plug-ins provide several spreadsheet-style views of an ontology, including existential fillers, individual relationships, and an object pro1 KB (162 words) - 17:08, March 4, 2010
- |Description=Visualize your ontology as a tag cloud (a set of related tags with corresponding weights). ...agcloud.com/ TagCloud] can give you insight into different aspects of your ontology. Ratings are based on different criteria (e.g., class usage, depth in the1 KB (170 words) - 17:04, March 4, 2010
- ...easy accessible at anytime. Your bookmarks will be saved along with your ontology annotations for future reference.983 bytes (136 words) - 11:27, May 8, 2012
- It provides methods for consistency checking, classification, etc. of an ontology as well as methods for getting the inferred information for a particular OW The examples on this page use an ontology that describes pizzas, which can be downloaded from [http://www.co-ode.org/11 KB (1,483 words) - 18:37, November 30, 2009
- | Create a new ontology into the current or new workspace | Open an ontology (and its imports) from a file into the current or new workspace11 KB (1,577 words) - 20:58, May 23, 2016
- * Multiple alternative views of the same ontology * UI hints for showing in which ontology statements are made3 KB (318 words) - 20:47, May 23, 2016
- ...ry large ontologies that cannot be loaded in memory. This method dumps the ontology directly in the database without loading it completely in memory.6 KB (697 words) - 17:31, April 10, 2009
- * generate phonetic lucene indicies for an ontology The first few lines just illustrate one of the standard ways of opening an ontology in Protege. This test code was set up to work with the pizza project but i4 KB (528 words) - 06:59, October 2, 2009
- OntoBase automatically generates ontology grounded in database (by means of Protégé API using frames and facets). U At this point Protege project will contain "ground" ontology generated by OntoBase with four top level classes:4 KB (671 words) - 08:21, March 2, 2011
- ...ext and provides an interface for rapidly bringing these terms into an OWL ontology. ...ext and provides an interface for rapidly bringing these terms into an OWL ontology. The plugin accesses TerMine via a Web Service over the Internet. Use is cu10 KB (1,645 words) - 19:01, March 18, 2008
- ...n style="font-weight:bold; font-size:18px;">How do I load a Protege-Frames ontology from a Protege database using the API?</span><br /><br /> The simplest way to load a Protege-Frames ontology from a database is to programatically load the project file (.pprj), which1 KB (176 words) - 17:54, February 22, 2008
- <span style="font-weight:bold; font-size:18px;">How do I load a Protege-OWL ontology from a Protege database using the API?</span><br /><br /> The simplest way to load a Protege-OWL ontology from a Protege database is to programatically load the project file (.pprj)1 KB (181 words) - 05:03, May 1, 2010
- '''Note''': If you loaded the OWL ontology by using the <code>Project</code> methods (e.g. <code>Project.load(String p If you load the OWL ontology by using the <code>ProtegeOWL</code> methods (e.g. <code>ProtegeOWL.createJ3 KB (365 words) - 16:07, May 27, 2008
- For each class in your ontology, Protege-OWL generates a default form that can be used to enter data for in == Download example ontology ==13 KB (2,132 words) - 20:17, March 22, 2008
- ...tab provides a powerful and easy-to-use feature for searching a classified ontology. It comes with the standard distribution of Protégé Desktop (versions 4, You can only execute a query on a classified ontology. Before attempting to execute a query, run a classifier:5 KB (836 words) - 21:15, May 23, 2016
- ...the concepts in your target ontology retain the metadata from the original ontology.<br /><br />1,016 bytes (151 words) - 12:44, April 23, 2008
- |VersionOf=Sub Ontology Tab267 bytes (31 words) - 18:40, August 12, 2008
- #REDIRECT [[Sub Ontology Tab 1.0.0]]36 bytes (4 words) - 08:56, April 12, 2008
- ...tege detects user names, passwords, and lists of available projects via an ontology (the Protege Metaproject).9 KB (1,294 words) - 18:14, April 25, 2013
- #REDIRECT [[Sub Ontology Tab 1.0.3]]36 bytes (4 words) - 11:02, April 16, 2008
- === Classifying the ontology with the DIG reasoner === Now you are ready to test the reasoner connection and to classify the ontology.8 KB (1,243 words) - 19:25, April 18, 2008
- == Opening an ontology using a web uri == ...e backend project. We will use the [http://proton.semanticweb.org proton] ontology as an example because it has a few non-trivial imports. The first step is9 KB (1,440 words) - 13:15, January 20, 2010
- ...you may want to display the classes, properties and/or individuals in your ontology using the value of rdfs:label or some other property, rather than using the ...ge''' for rdfs:label, then you have to set the default language of the top ontology. This is done by setting the value of the property <code>protege:defaultLan3 KB (477 words) - 16:06, May 27, 2008
- ...use of names for OWL ontologies is to make the name be the location of the ontology on the Web, but this is outside of this formal treatment.)'' ...s declared'' to be of type owl:Ontology. So for instance in the pizza owl ontology, the declaration in question is the following:14 KB (2,405 words) - 11:44, July 25, 2011
- ...his is to try and open your ontology with Protege. If Protege can open the ontology without errors, the Protege Web Browser should succeed in opening the proje7 KB (1,166 words) - 12:16, October 23, 2008
- The subsumption hierarchy is not the only "axis" on which an ontology relies. Many other axis (such as partOf) can be useful for navigation.969 bytes (129 words) - 18:12, April 28, 2011
- '''Question: How do I import an ontology using the Protege OWL API?''' //if you want to use a custom prefix for the namespace of the imported ontology, uncomment the following line919 bytes (114 words) - 15:57, May 27, 2008
- * '''The Components ontology''' – defines the part-whole relationship and is used to represent the dec * '''The Connections ontology''' – defines the topology of a system and describes how components of a s2 KB (261 words) - 09:32, June 3, 2016
- # In the OWL menu, select "Preferences" and then "Import Protege metadata ontology" # In the Metadata tab, make sure the primary ontology (the top one) is active and selected5 KB (763 words) - 17:50, June 20, 2008
- ...ted in a separate ontology (which, on its turn, is imported in the current ontology)1 KB (204 words) - 19:17, December 17, 2009
- ...This driver can be used with DataMaster to import concepts into a Protege ontology from appropriately formatted Excel spreadsheets, as if they were tables in4 KB (548 words) - 15:13, March 15, 2009
- The tab makes use of a Protege ontology to store three major categories of information EZPal presents in the interf3 KB (395 words) - 14:52, July 8, 2008
- ...htmost panel displays the mapping knowledge base: At the top, the mappings ontology and existing instances of mapping relations; below, the contents of the sel5 KB (741 words) - 17:52, July 21, 2008
- ...om a class form read-only by using the API. The example uses the Newspaper ontology - it will show the form for "Destination Mars" instance of class "Article"936 bytes (126 words) - 18:45, July 8, 2008
- <label value="Active Ontology"/> An EditorKit is the access point for a particular type of model (or ontology) and a GUI to handle that model.10 KB (1,310 words) - 23:09, May 23, 2016
- ...lugin is a Protégé Tab widget which generates java files representing an ontology that can be used with the JADE environment. With the beangenerator tool you * Include/import JADE Abstract Ontology.5 KB (704 words) - 13:15, October 17, 2016
- ...eates visual representations of the differences between two versions of an ontology.620 bytes (69 words) - 14:58, July 24, 2008
- This page describes the various options for naming entities in an ontology for Protege 4, 5 and newer. eg The Pizza class in the pizza ontology is identified by its URI (http://www.co-ode.org/ontologies/pizza/pizza.owl#9 KB (1,451 words) - 21:03, May 23, 2016
- ...o work within Protege 4.x to test what further requirements are needed for ontology transforms.618 bytes (77 words) - 06:22, November 14, 2008
- * Choose a name for the page that discusses the new plugin (e.g. "Sub Ontology Tab"). ...hp/Category:Person Person Category] lists the people who are known to this ontology.5 KB (823 words) - 23:10, May 23, 2016
- <string>OWL Ontology</string>1 KB (167 words) - 17:41, September 30, 2008
- ...How do I change the name of an entity (class, property, individual) in my ontology? === === Why does my ontology contain classes named Error1, Error2, ...? ===6 KB (893 words) - 16:50, February 17, 2022
- These notes, which are not part of your ontology, These notes are part of your ontology.4 KB (633 words) - 17:22, November 13, 2008
- These notes, which are not part of your ontology,6 KB (989 words) - 17:31, November 13, 2008
- You can save the ontology-related information for a {{#var:PrF}} project5 KB (779 words) - 18:45, March 5, 2009
- in the [http://www.w3.org/2001/sw/WebOnt W3C's Web Ontology Language (OWL)]. "An OWL ontology may include descriptions4 KB (634 words) - 17:46, November 13, 2008
- Information about the project ontology determines how the project ontology and instances are stored.2 KB (405 words) - 17:47, November 13, 2008
- You can save the ontology-related information for a {{#var:PrF}} project these files contain further information about the ontology and instances of the project.4 KB (584 words) - 17:47, November 13, 2008
- which contains XML-encoded ontology information for the knowledge base\2 KB (374 words) - 17:48, November 13, 2008
- Once you have built the classes and slots of your ontology, In {{#var:PrF}}, the expectation is that ontology creation and instance entry3 KB (566 words) - 17:59, November 13, 2008
- === Ontology === In {{#var:PrF}}, an ontology is represented as a set of classes with their associated slots.6 KB (936 words) - 14:45, November 14, 2008
- Developers should not expect to "complete" ontology development Build an initial small ontology of [[PrF_UG_classes|classes]]4 KB (643 words) - 18:19, November 13, 2008
- An ontology describes the concepts and relationships Several applications can use the same domain ontology to solve different problems,3 KB (486 words) - 18:20, November 13, 2008
- In this model, an ontology consists of: (e.g., for ontology management, ontology visualization, inference and reasoning, etc.)2 KB (286 words) - 15:08, March 8, 2010
- based on files which contain your ontology information in one of the supported formats.1 KB (251 words) - 18:32, November 13, 2008
- Once you have identified the relationship in your ontology, If the information is important in your ontology,7 KB (1,204 words) - 18:48, November 13, 2008
- These notes, which are not part of your ontology,16 KB (2,681 words) - 18:51, November 13, 2008
- These notes, which are not part of the ontology structure,4 KB (613 words) - 19:00, November 13, 2008
- ...tege|Collaborative Protege]] extension: e.g., tracking changes, annotating ontology components (classes, properties, etc.) or changes (creation of a class). Th ..._in_collaborative_environments paper describing the Changes and Annotation ontology].8 KB (1,022 words) - 17:57, October 24, 2008
- '''WebProtégé''' is an open source, lightweight, web-based ontology editor. ...ting. Simply click on an ontology name in the ''Name'' column to open the ontology. You will only see the ontologies to which your user has access to. If you4 KB (673 words) - 15:15, April 25, 2013
- '''WebProtégé''' is an open source, lightweight, web-based ontology editor. ...t for linking to BioPortal is available on the [http://www.bioontology.org/ontology-editing-and-publishing-using-webprotege-and-bioportal NCBO Webinar webpage]8 KB (1,250 words) - 14:46, February 9, 2022
- * Try typing in the '''find''' box. All entity URIs in the ontology will be searched for the text entered in here.1 KB (214 words) - 08:48, November 7, 2008
- ...most of them. This is a quick trip through how to build our standard Pizza ontology in 10 minutes or less of actual typing. ...lready know what you are doing and have a list of the main elements of the ontology written down in pencil or sketched in a text editor, mind-map, concept map12 KB (1,828 words) - 20:32, May 23, 2016
- ...g arbitrary expressions, perhaps for testing purposes, or just to make the ontology more clear. This is the reason the [[DLQueryTab|DL query tab]] is so useful P4 now allows ACs to be added to the ontology in such a way that they can be saved and browsed just like ordinary classes10 KB (1,719 words) - 21:13, May 23, 2016
- ...in a frame list will generally represent a single statement(axiom) in the ontology. * '''Remove X''' delete this statement from the ontology17 KB (2,497 words) - 20:56, May 23, 2016
- ...candidate entities or ensure the correct spelling of a named thing in the ontology, an autocomplete feature has been implemented.4 KB (586 words) - 21:12, May 23, 2016
- ...f axioms can be extracted from an ontology and optionally moved to another ontology. Selection can be made by several different algorithms. ** '''Select ontology''' choose which of the loaded ontologies you wish to move axioms from4 KB (683 words) - 08:32, December 5, 2008
- = Display images in the ontology = We will use as an example the Pizza ontology: we will add a property to class "Country" that will contain the path to an4 KB (724 words) - 18:57, January 8, 2009
- ...metadata for ontologies and facilitates the export of that metadata to the Ontology Medata Vocabulary. ...owl panel, and the extras panel. The plugin computes metadata for a given ontology and displays in these panels. Two of the panels, the owl panel and the ext5 KB (801 words) - 18:29, January 27, 2009
- * added support for versions of an ontology ...is not null, this will mean that the ontology is a specific version of the ontology.9 KB (1,513 words) - 12:44, November 30, 2009
- |Description=ACE View is an ontology and rule editor that uses Attempto Controlled English (ACE) in order to cre441 bytes (57 words) - 17:29, March 16, 2012
- ...erated Java classes corresponding to existing instances/individuals in the ontology. This is very useful when creating messages with complex content.2 KB (268 words) - 01:19, December 4, 2012
- ...rather than database mode, then you will loose all the changes made to the ontology from the last save until the kill operation.17 KB (2,876 words) - 14:04, January 24, 2012
- ...spend some time browsing the class hierarchy. You will find a very simple ontology of users, security, and projects: The policy model represented by the metaproject ontology is very simple and flexible. The idea is that you can attach to a policy co19 KB (3,053 words) - 15:52, March 29, 2011
