Protege 3.4.5 Release Notes

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Protege 3.4.5 Patch Release -- March 11, 2011

Release Notes

Core Protege

  • Fixed a database connection leak.
  • Removed unicode_panel.jar from the classpath of Protege server's startup script because it threw headless exceptions if Protege-OWL used Forms.
  • Made some updates to the Metaproject API. The Metaproject API facilitates programmatic access to Protege's Metaproject, which is used by the client-server version of Protege.

Change Management

- Added options in the Change menu -> Clean Up Changes Ontology: 

  1. Delete all subchanges in ChAO (Changes and Annotation Ontology)
  2. Wipe out ChAO (replace with an empty one)

- The Change menu will show up if the change tracking is enabled. - Added "View Change Analysis" item in the Change menu that will start the change analysis plugin - Fix for storing timestamps in ChAO with different locales - Added in ChAO a watchedBranch property - Improved significantly the performance of the initial change caching for the database mode - Added a column in the Changes Table to display the ontology entity on which the change occurred

Lucene Query

  • It's now possible to configure which entities, i.e., classes, properties, or individuals, should be indexed.
  • The query result list can now be filtered by entity type, i.e, class, property, individual, using check-boxes at the bottom of the result list.
  • It's now possible to index the browser text for entities by indexing the :NAME slot. A current limitation is that you also need to index the properties/slots that are part of browser slot patterns to ensure that the browser text index will be correctly updated. We're working on a better solution for this.
  • Implemented support for expanded queries for browser text, e.g., "mal mel" will retrieve results for "malignant melanoma".

MappingMaster

BioPortal Reference

Download

If you haven't registered to use Protege, please do so before downloading:

http://protege.stanford.edu/download/register.html

Download URL for registered users:

http://protege.stanford.edu/download/protege/3.4/installanywhere/Web_Installers/

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