Difference between revisions of "Protege 3.4.5 Release Notes"

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[[image:Protege_3.4.5_LuceneQuery.jpg|thumb|500px|Lucene Query plug-in Protege 3.4.5]]
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<span style="font-weight:bold; font-size:20px;">Protege 3.4.5 Patch Release -- March 11, 2011</span><br /><br />
 
<span style="font-weight:bold; font-size:20px;">Protege 3.4.5 Patch Release -- March 11, 2011</span><br /><br />
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__TOC__<br />
  
 
== Release Notes ==
 
== Release Notes ==
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* Fixed a database connection leak.
 
* Fixed a database connection leak.
  
−
* Removed unicode_panel.jar from the classpath of the Protege server start script because it threw a headless exception if protege-owl used forms
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* Removed unicode_panel.jar from the classpath of Protege server's startup script because it threw headless exceptions if Protege-OWL used Forms.
  
 
* Made some updates to the Metaproject API.  The Metaproject API facilitates programmatic access to Protege's [[Protege_Client_Server_Tutorial_Configuration#The_Metaproject|Metaproject]], which is used by the client-server version of Protege.  
 
* Made some updates to the Metaproject API.  The Metaproject API facilitates programmatic access to Protege's [[Protege_Client_Server_Tutorial_Configuration#The_Metaproject|Metaproject]], which is used by the client-server version of Protege.  
  
 
=== Change Management ===
 
=== Change Management ===
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* Added new options to the Change menu (under Change | Clean Up Changes Ontology...):
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** Delete sub-changes (keep only top-level changes)
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** Wipe out changes and annotations (replace ChAO with an empty one)
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* The Change menu will now only appear if change tracking is enabled.
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* Added a "View Change Analysis" menu item in the Change menu that will start the [[ChangeAnalysisTab|Change Analysis plug-in]].
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* Implemented a fix for storing timestamps with different locales in the ChAO.
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* Added a watchedBranch property to the ChAO.
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* Significantly improved performance of the initial change caching for database mode.
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* Added a column in the Change History table to display the ontology entity on which the change occurred.
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=== Lucene Query ===
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* It's now possible to configure which entities, i.e., classes, properties, or individuals, should be indexed.
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* The query result list can now be filtered by entity type, i.e, class, property, individual, using check-boxes at the bottom of the result list.
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* It's now possible to index the browser text for entities by indexing the :NAME slot.  A current limitation is that you also need to index the properties/slots that are part of browser slot patterns to ensure that the browser text index will be correctly updated.  We're working on a better solution for this.
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* Implemented support for expanded queries for browser text, e.g., "mal mel" will retrieve results for "malignant melanoma".
  
 
=== MappingMaster ===
 
=== MappingMaster ===
  
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* Significant extensions to the MappingMaster spreadsheet-to-OWL mapping language.  Read more: http://protege.cim3.net/cgi-bin/wiki.pl?MappingMasterDSL.
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* Implemented significant extensions to the MappingMaster [http://protege.cim3.net/cgi-bin/wiki.pl?MappingMasterDSL spreadsheet-to-OWL mapping language].
  
 
=== BioPortal Reference ===
 
=== BioPortal Reference ===
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* Updated the [[BioPortal_Reference_Plugin|BioPortal Reference plug-in]] to work with the latest version of [http://bioportal.bioontology.org/ BioPortal] (2.6.4).
  
 
== Download ==
 
== Download ==
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Download URL for registered users:
 
Download URL for registered users:
  
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http://protege.stanford.edu/download/protege/3.4/installanywhere/Web_Installers/
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http://protege.cim3.net/download/old-releases/3.4.5/installanywhere/Web_Installers/

Latest revision as of 16:02, April 27, 2011

Lucene Query plug-in Protege 3.4.5

Protege 3.4.5 Patch Release -- March 11, 2011


Release Notes

Core Protege

  • Fixed a database connection leak.
  • Removed unicode_panel.jar from the classpath of Protege server's startup script because it threw headless exceptions if Protege-OWL used Forms.
  • Made some updates to the Metaproject API. The Metaproject API facilitates programmatic access to Protege's Metaproject, which is used by the client-server version of Protege.

Change Management

  • Added new options to the Change menu (under Change | Clean Up Changes Ontology...):
    • Delete sub-changes (keep only top-level changes)
    • Wipe out changes and annotations (replace ChAO with an empty one)
  • The Change menu will now only appear if change tracking is enabled.
  • Implemented a fix for storing timestamps with different locales in the ChAO.
  • Added a watchedBranch property to the ChAO.
  • Significantly improved performance of the initial change caching for database mode.
  • Added a column in the Change History table to display the ontology entity on which the change occurred.

Lucene Query

  • It's now possible to configure which entities, i.e., classes, properties, or individuals, should be indexed.
  • The query result list can now be filtered by entity type, i.e, class, property, individual, using check-boxes at the bottom of the result list.
  • It's now possible to index the browser text for entities by indexing the :NAME slot. A current limitation is that you also need to index the properties/slots that are part of browser slot patterns to ensure that the browser text index will be correctly updated. We're working on a better solution for this.
  • Implemented support for expanded queries for browser text, e.g., "mal mel" will retrieve results for "malignant melanoma".

MappingMaster

BioPortal Reference

Download

If you haven't registered to use Protege, please do so before downloading:

http://protege.stanford.edu/download/register.html

Download URL for registered users:

http://protege.cim3.net/download/old-releases/3.4.5/installanywhere/Web_Installers/

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