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== Protege Desktop User Documentation ==
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= Protege Desktop User Documentation =
  
This page contains a collection of links to documentation for end users of '''Protege Desktop, versions 4.x and higher'''.   
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This page is the official documentation home for the '''Protege Desktop application versions 4, 5 and higher'''.   
  
We welcome your feedback!  Subscribe to our free support mailing list via the [http://mailman.stanford.edu/mailman/listinfo/protege-user list information page].
 
  
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__TOC__
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== Build status & release notes ==
  
__TOC__
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The latest version of Protege Desktop is '''5.0''':
  
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* [https://github.com/protegeproject/protege-distribution/releases Release notes]
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* [[Install_Protege5|Installation instructions]]
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* [http://protege.stanford.edu/products.php#desktop-protege Download latest version of Protege]
  
=== Build status & release notes ===
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You may also download [[Protege_Desktop_Old_Versions|previous versions of Protege]] and read the complete list of release notes. Older Protege 5.0 beta release notes are available [[Protege_5.0_Beta_Release_Notes|here]].
  
The latest Protege Desktop build is the '''[[P4_3_Release_Announcement|4.3 release]]''' from April 15, 2013.
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== Bugs & feature requests ==
  
To help you decide whether to update, please refer to our [[Protege_Release_Notes|complete list of release notes]] for prior versions of Protege.
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Before you report a bug or feature request, check the [http://protege-project.136.n4.nabble.com/ Protege mailing lists archives] to ensure it hasn't already been reported. If the item is not currently open or you have further information or a question about an existing item, please post a message on the [http://mailman.stanford.edu/mailman/listinfo/protege-user protege-user mailing list].  Give as much detail as possible (including examples or ontologies if possible) as this will help us track things down more quickly.
  
=== Bugs & feature requests ===
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Current GitHub issue tracker: https://github.com/protegeproject/protege/issues?state=open
  
Before you report a feature request or potential bug, check the lists below to ensure it hasn't already been reported. If the item is not currently open or you have further information or a question about an existing item, please post a message on the [http://mailman.stanford.edu/mailman/listinfo/p4-feedback Protege 4 mailing list].  Give as much detail as possible (including examples or ontologies if possible) as this will help us track things down more quickly.
 
  
* [https://bmir-gforge.stanford.edu/gf/project/owleditor/tracker/?action=TrackerItemBrowse&tracker_id=121 Feature request tracker] - a searchable list of features that have been requested (and implemented)
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== Frequently asked questions ==
  
* [https://bmir-gforge.stanford.edu/gf/project/owleditor/tracker/?action=TrackerItemBrowse&tracker_id=118 Bugtracker] - a searchable list of reported and resolved bugs
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We've put together a wiki page to answer the [[Protege-OWL_4_FAQ | most commonly asked questions]] about Protege Desktop.
  
=== [[Protege-OWL_4_FAQ | Frequently asked questions]] ===
 
  
We have put together a wiki page to answer the most commonly asked questions about the 4.x series of the Protege application:
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== Getting started / tutorials ==
  
=== Getting started / tutorials ===
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The Getting started and tutorials have been moved to the [[Main_Page|main page]] of the wiki.
  
* [[Protege4GettingStarted | Getting started with the Protege-OWL editor]] - a short guide to the interface
 
* [[Pr4_UG | Protege 4 User's Guide]] - a guide on how to use Protege to create, edit, and inspect ontologies
 
* [[Protege4Pizzas10Minutes | Pizzas in 10 minutes: A demo of  modeling shortcuts]] - a quickstart guide to creating your first OWL ontology
 
* [http://owl.cs.manchester.ac.uk/tutorials/protegeowltutorial/ A Practical Guide to Building OWL Ontologies using Protege 4 and CO-ODE Tools] - a substantial guide to OWL and ontology engineering
 
* Cody Burleson's [http://www.semanticfocus.com/blog/entry/title/introduction-to-semantic-web-vision-and-technologies-part-5-building-owl-ontologies-using-protege-4-screencast/ screencast] version of the tutorial listed directly above (it would be great if he got some encouragement for part 6).
 
* [http://arxiv.org/abs/1201.4089 A Description Logic Primer]
 
  
=== Editor features ===
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== Editor features ==
  
 
* [[Protege4Features | Overview of features]] - a quick summary of the editor
 
* [[Protege4Features | Overview of features]] - a quick summary of the editor
* [[Protege4Views | P4 views guide]] - a list of all of the default views that are distributed with P4
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* [[Protege4Views | Protege views guide]] - a list of all of the default views that are distributed with Protege
* [[Protege4Shortcuts | P4 menu guide]] - all of the default menus explained in detail (with keyboard shortcuts)
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* [[Protege4Shortcuts | Protege menu guide]] - all of the default menus explained in detail (with keyboard shortcuts)
* [[Protege4Preferences | P4 preferences guide]] - customising P4 to your needs
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* [[Protege4Preferences | Protege preferences guide]] - customizing Protege to your needs
* [[Protege4NamingAndRendering|Naming and rendering of entities]] - a note on naming things in OWL and configuring P4 to support your naming conventions
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* [[Protege4NamingAndRendering|Naming and rendering of entities]] - a note on naming things in OWL and configuring Protege to support your naming conventions
* [[Protege4ExpressionEditor | P4 expression editor]] - adding and editing OWL expressions in P4
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* [[Protege4ExpressionEditor | Protege expression editor]] - adding and editing OWL expressions in Protege
* [[Manchester_OWL_Syntax|Manchester OWL Syntax]] - an overview of the default syntax used by P4
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* [[Manchester_OWL_Syntax|Manchester OWL Syntax]] - an overview of the default syntax used by Protege
 
* [[DLQueryTab | DL Query tab]] - how to query using arbitrary class expressions in OWL
 
* [[DLQueryTab | DL Query tab]] - how to query using arbitrary class expressions in OWL
* [[P4AnonymousClasses|Anonymous classes]] - support in P4 for class expressions
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* [[Importing_Ontologies_in_P41|OWL Imports]] -  modular ontology support in OWL and Protege
* [[Importing_Ontologies_in_P41|OWL Imports]] -  modular ontology support in OWL and P4.1
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* [[Protege4AxiomAnnotations|Axiom annotations]] - how to annotate at axiom level in Protege  
* [[Protege4AxiomAnnotations|Axiom annotations]] - how to annotate at axiom level in Protege 4
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* [[Protege4OWLDiff|Protege OWL Diff]] - compare two versions of an ontology
  
=== Advanced features ===
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== Advanced features ==
  
 
* [[BeanShell | The Bean Shell]] - Making complex queries against an ontology.
 
* [[BeanShell | The Bean Shell]] - Making complex queries against an ontology.
 
* [[Protege4ClientServer | The Protege 4 Server]]
 
* [[Protege4ClientServer | The Protege 4 Server]]
  
=== Further setup / configuration ===
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== Further setup / configuration ==
  
 
* [[ChangingTheHeapSize|Adding more memory]]
 
* [[ChangingTheHeapSize|Adding more memory]]
 
* [[EnablingDoubleClick|Double-clicking on OWL files]]
 
* [[EnablingDoubleClick|Double-clicking on OWL files]]
* [[ClearingP4Preferences|Dealing with P4 preferences problems]]
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* [[ClearingP4Preferences|Dealing with Protege preferences problems]]
 
* [[Working with firewalls and proxies]]
 
* [[Working with firewalls and proxies]]
  
=== Plugins ===
 
  
==== Finding plug-ins ====
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== Plugins ==
  
* From build 104 P4 will find plugins and updates for you. See our [[EnablePluginAutoUpdate|Auto Update]] page.
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=== Finding plug-ins ===
  
* [[Protege-OWL_4.0 | Plugins for Protege 4.x OWL editor]] - the list of "Compatible Plugins" on this page is the result of a semantic query that gathers all plug-ins that have declared themselves compatible with the 4.x version of the Protege-OWL editor.
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* Protege will find plugins and updates for you. See our [[EnablePluginAutoUpdate|Auto Update]] page.
  
* [http://www.co-ode.org/downloads/protege-x/plugins/ CO-ODE Protege 4.x Plugins] - the CO-ODE group at the University of Manchester is the biggest contributor of plug-ins to the Protege-OWL editor. This is a good place to go to download early releases and source code for CO-ODE developed plug-ins.
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* [[Protege-OWL_4.0 | Plugins for Protege]] - the list of all plugins compatible with different versions is available [[Protege_Plugin_Library|here]].
  
==== Advertising plug-ins ====
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* [https://github.com/co-ode-owl-plugins CO-ODE Protege Plugins] - the CO-ODE group at the University of Manchester is the biggest contributor of plug-ins to the Protege editor. The CO-ODE plugins that are compatible with your installation of Protege will show up when going in the File menu -> Check for plugins
  
If you have developed a plug-in for Protege-OWL 4.x and you would like to contribute it to the community,
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=== Advertising plug-ins ===
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If you have developed a plug-in for Protege and you would like to contribute it to the community,
 
please see [[Protege4Contributing#Plugins|contributing plugins]].
 
please see [[Protege4Contributing#Plugins|contributing plugins]].
  
=== Contributing ===
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== Contributing ==
  
 
Please see this page for details on how you can [[Protege4Contributing|contribute]].
 
Please see this page for details on how you can [[Protege4Contributing|contribute]].

Revision as of 09:05, November 2, 2016

Protege Desktop User Documentation

This page is the official documentation home for the Protege Desktop application versions 4, 5 and higher.



Build status & release notes

The latest version of Protege Desktop is 5.0:

You may also download previous versions of Protege and read the complete list of release notes. Older Protege 5.0 beta release notes are available here.

Bugs & feature requests

Before you report a bug or feature request, check the Protege mailing lists archives to ensure it hasn't already been reported. If the item is not currently open or you have further information or a question about an existing item, please post a message on the protege-user mailing list. Give as much detail as possible (including examples or ontologies if possible) as this will help us track things down more quickly.

Current GitHub issue tracker: https://github.com/protegeproject/protege/issues?state=open


Frequently asked questions

We've put together a wiki page to answer the most commonly asked questions about Protege Desktop.


Getting started / tutorials

The Getting started and tutorials have been moved to the main page of the wiki.


Editor features

Advanced features


Further setup / configuration


Plugins

Finding plug-ins

  • Protege will find plugins and updates for you. See our Auto Update page.
  • CO-ODE Protege Plugins - the CO-ODE group at the University of Manchester is the biggest contributor of plug-ins to the Protege editor. The CO-ODE plugins that are compatible with your installation of Protege will show up when going in the File menu -> Check for plugins

Advertising plug-ins

If you have developed a plug-in for Protege and you would like to contribute it to the community, please see contributing plugins.


Contributing

Please see this page for details on how you can contribute.