WebProtegeUsersGuide - Revision history

Samsontu at 21:46, February 9, 2022

2022-02-09T21:46:24Z

Samsontu at 21:45, February 9, 2022

2022-02-09T21:45:55Z

TaniaTudorache at 02:34, November 11, 2015

2015-11-11T02:34:27Z

TaniaTudorache: added the imported ontology

2015-11-09T23:48:52Z

added the imported ontology

TaniaTudorache: /* Viewing and Editing OWL 2 Ontologies */

2015-01-16T23:21:12Z

‎Viewing and Editing OWL 2 Ontologies

Matthewhorridge at 23:08, March 17, 2014

2014-03-17T23:08:19Z

Matthewhorridge: /* Editing OWL 2 Ontologies */

2014-03-17T22:48:57Z

‎Editing OWL 2 Ontologies

Matthewhorridge at 22:48, March 17, 2014

2014-03-17T22:48:35Z

Matthewhorridge at 22:46, March 17, 2014

2014-03-17T22:46:19Z

Matthewhorridge at 22:44, March 17, 2014

2014-03-17T22:44:32Z

← Older revision		Revision as of 21:46, February 9, 2022
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	You may also watch a [http://videolectures.net/iswc2013_horridge_webprotege/ 15 minutes presentation] of the simplified user interface of WebProtege and how we came to it that was presented at [http://iswc2013.semanticweb.org/ ISWC 2013].		You may also watch a [http://videolectures.net/iswc2013_horridge_webprotege/ 15 minutes presentation] of the simplified user interface of WebProtege and how we came to it that was presented at [http://iswc2013.semanticweb.org/ ISWC 2013].

−	~~<! --~~ A more comprehensive [https://stanford.webex.com/stanford/lsr.php?AT=pb&SP=MC&rID=62510447&rKey=13018bdbb414ba08 one-hour long screencast] showing also the OBO editing, and the support for linking to BioPortal is available on the [http://www.bioontology.org/ontology-editing-and-publishing-using-webprotege-and-bioportal NCBO Webinar webpage]. ~~-->~~	+	A more comprehensive [https://stanford.webex.com/stanford/lsr.php?AT=pb&SP=MC&rID=62510447&rKey=13018bdbb414ba08 one-hour long screencast] showing also the OBO editing, and the support for linking to BioPortal is available on the [http://www.bioontology.org/ontology-editing-and-publishing-using-webprotege-and-bioportal NCBO Webinar webpage].

← Older revision		Revision as of 21:45, February 9, 2022
Line 20:		Line 20:
	You may also watch a [http://videolectures.net/iswc2013_horridge_webprotege/ 15 minutes presentation] of the simplified user interface of WebProtege and how we came to it that was presented at [http://iswc2013.semanticweb.org/ ISWC 2013].		You may also watch a [http://videolectures.net/iswc2013_horridge_webprotege/ 15 minutes presentation] of the simplified user interface of WebProtege and how we came to it that was presented at [http://iswc2013.semanticweb.org/ ISWC 2013].

−	A more comprehensive [https://stanford.webex.com/stanford/lsr.php?AT=pb&SP=MC&rID=62510447&rKey=13018bdbb414ba08 one-hour long screencast] showing also the OBO editing, and the support for linking to BioPortal is available on the [http://www.bioontology.org/ontology-editing-and-publishing-using-webprotege-and-bioportal NCBO Webinar webpage].	+	<! -- A more comprehensive [https://stanford.webex.com/stanford/lsr.php?AT=pb&SP=MC&rID=62510447&rKey=13018bdbb414ba08 one-hour long screencast] showing also the OBO editing, and the support for linking to BioPortal is available on the [http://www.bioontology.org/ontology-editing-and-publishing-using-webprotege-and-bioportal NCBO Webinar webpage]. -->

← Older revision		Revision as of 02:34, November 11, 2015
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	The zip archive can be uploaded to WebProtege through the ''Upload Projects'' button, and WebProtege will be able to read the local imports from the archive.		The zip archive can be uploaded to WebProtege through the ''Upload Projects'' button, and WebProtege will be able to read the local imports from the archive.
		+
		+
		+	= Rules support =
		+
		+	It is possible to view and edit rules in WebProtege using the [[WebProtegeUsersGuide#The_OWL_Entity_Description_Editor\|OWL Entity Description Editor]]. The rules are shown in the ''Rule'' section:
		+
		+	[[File:SwrlWP1.png\|600px]]
		+
		+
		+	The editing of rules uses auto-completion for the entities in the ontology and for swrl builtins:
		+
		+	[[File:SwrlWP2.png\|600px]]

← Older revision		Revision as of 23:48, November 9, 2015
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	[[File:owl-entity-editor-3.png]]		[[File:owl-entity-editor-3.png]]
		+
		+
		+	= Ontologies with imports =
		+
		+	Ontologies with imports can be uploaded to WebProtege. If an import is available at the imported URL, then WebProtege will fetch it from there.
		+
		+	However, it is also possible to have local imports that are not resolvable at the import URL, but which are provided as additional files (similar to how Protege desktop handles local imports).
		+
		+	To upload to WebProtege an ontology with local imports, create a zip archive, which should contain:
		+	* the top ontology (most importing one), which needs to be renamed to <code>root-ontology.owl</code>, and
		+	* the imported OWL files.
		+
		+	The zip archive can be uploaded to WebProtege through the ''Upload Projects'' button, and WebProtege will be able to read the local imports from the archive.
		+

	= Other tabs and portlets =		= Other tabs and portlets =

@@ Line 73: / Line 73: @@
 By default WebProtégé display a simplified user interface that allows you to edit a subset of OWL 2 syntax.  In order to view and edit an OWL 2 ontology you can add some OWL 2 portlets to any tab in your project.  You can do this by clicking the Add Content button (shown below) on the top right of each tab.
-[[File:add-content.png]]
+[[File:Add-content-2.png]]
-WebProtégé currently contains the following OWL 2 specific portlets:
+WebProtégé currently contains the following OWL 2 specific portlets, the '''OWL Entity Description Browser''' and the '''OWL Entity Description Editor'''.
-* '''Conditions''' - Offers a Protégé-4 style view of the class description.  Axioms can be added, edited and removed in a similar way that they can in the Protégé-4 class description editor view.
+== The OWL Entity Description Browser ==
-[[File:Conditions-example.png]]
+'''OWL Entity Description Browser''' - shows an extended version of the Manchester Syntax rendering for the selected entity (class, object property, data property, annotation, named individual).  For example, the figure below shows the class 'glandular epithelium' being viewed in the [https://github.com/obophenotype/cephalopod-ontology Cephalapod ontology].
 [[File:cephalapod-example.png]]
@@ Line 93: / Line 91: @@
 [[File:axiom-annotations-example.png]]
 = Other tabs and portlets =

← Older revision		Revision as of 23:08, March 17, 2014
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	[[File:cephalapod-property-example.png]]		[[File:cephalapod-property-example.png]]
		+
		+	As shown in the Figure below, axiom annotations are shown as indented annotations (a slightly more compact form of the Manchester Syntax).
		+
		+	[[File:axiom-annotations-example.png]]

	= Other tabs and portlets =		= Other tabs and portlets =

@@ Line 69: / Line 69: @@
 [[File:WP-dashboard.png|800px]]
-= Editing OWL 2 Ontologies =
+= Viewing and Editing OWL 2 Ontologies =
 By default WebProtégé display a simplified user interface that allows you to edit a subset of OWL 2 syntax.  In order to view and edit an OWL 2 ontology you can add some OWL 2 portlets to any tab in your project.  You can do this by clicking the Add Content button (shown below) on the top right of each tab.

← Older revision		Revision as of 22:44, March 17, 2014
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	[[File:WP-dashboard.png\|800px]]		[[File:WP-dashboard.png\|800px]]

		+	= Editing OWL 2 Ontologies =

		+	By default WebProtégé display a simplified user interface that allows you to edit a subset of OWL 2 syntax. In order to view and edit an OWL 2 ontology you can add some OWL 2 portlets to any tab in your project. WebProtégé currently contains the following OWL 2 specific portlets:
		+
		+	* '''Conditions''' - Offers a Protégé-4 style view of the class description. Axioms can be added, edited and removed in a similar way that they can in the Protégé-4 class description editor view.
		+
		+
		+
		+	* '''Entity Description''' - shows an extended version of the Manchester Syntax rendering for the selected entity (class, object property, data property, annotation, named individual). For example, the figure below shows the class 'glandular epithelium' being viewed in the [https://github.com/obophenotype/cephalopod-ontology Cephalapod ontology].
		+
		+	[[File:cephalapod-example.png]]
		+
		+	Similarly, the figure below shows the description of object property 'negatively regulates'. The axioms that define 'negatively regulates' are defined in the ro ontology, which is imported by the Cephalapod ontology.
		+
		+	[[File:cephalapod-property-example.png]]

	= Other tabs and portlets =		= Other tabs and portlets =