Protege 3.5 Release Notes - Revision history

JenniferVendetti: Updated link to the new support mailing list (protege-user)

2014-03-05T23:48:24Z

Updated link to the new support mailing list (protege-user)

JenniferVendetti: Corrected the link to download Protege 3.5. This changed after rollout of new website.

2014-03-05T23:46:55Z

Corrected the link to download Protege 3.5. This changed after rollout of new website.

TaniaTudorache: /* BioPortal Import Plug-in */

2013-04-25T03:02:49Z

‎BioPortal Import Plug-in

TaniaTudorache: /* Core Protege */

2013-04-25T02:58:54Z

‎Core Protege

JenniferVendetti: /* Change Management */

2013-04-25T01:00:13Z

‎Change Management

JenniferVendetti at 00:56, April 25, 2013

2013-04-25T00:56:48Z

JenniferVendetti: checkpoint save

2013-04-25T00:56:17Z

checkpoint save

JenniferVendetti: JenniferVendetti moved page P3 5 Release Announcement to Protege 3.5 Release Notes: Changed name to match the name given in the readme file in the Protege installation directory for Protege 3.5 release.

2013-04-25T00:43:57Z

JenniferVendetti moved page P3 5 Release Announcement to Protege 3.5 Release Notes: Changed name to match the name given in the readme file in the Protege installation directory for Protege 3.5 release.

JenniferVendetti at 00:42, April 25, 2013

2013-04-25T00:42:22Z

JenniferVendetti: checkpoint save (checkpoint save)

2013-04-25T00:33:59Z

checkpoint save (checkpoint save)

New page

<br /><span style="font-weight:bold; font-size:22px;">Protege 3.5 Release -- April 24, 2013</span>
__NOTOC__

* [http://protege.stanford.edu/download/registered.html#p3.5 Download Protege 3.5] (new users, [http://protege.stanford.edu/download/register.html please register first])
* Submit feedback, questions, and/or bug reports on the [http://mailman.stanford.edu/mailman/listinfo/protege-owl Protege 4 mailing list]
* [[Protege3UserDocs|Read Protege 3.5 documentation]]
* Join the Protege community on [http://www.facebook.com/pages/Protege-Project/136205016405270 Facebook] and [http://www.twitter.com/protegeproject Twitter]

'''Note to users of Mac OS X 10.7.5 and above:''' The default [http://support.apple.com/kb/ht5290 Gatekeeper] settings for Mountain Lion are to only allow application downloads from the Mac App Store and identified developers. The Protege software does not carry "identified developer" status, and you may see an error when attempting to download that the installer file is "damaged and can't be opened". To successfully download the installer file, navigate to Apple menu | System Preferences… | Security & Privacy | General tab, and select "Anywhere" from "Allow applications downloaded from".

== Release Notes ==
''This section describes changes relative to Protege 3.4.8''

'''Core Protege'''
* Dialogs are now centered in the main window.
* System slots can now be selected with export to CSV.
* Fixed a bug with the Finish button not being enabled when creating a database project.

'''Protege-OWL'''
* The Protege native writer export is now done in a more efficient way on the server, when running in client-server mode. The performance increase should be significant, especially on slow networks.
* Fixed a bug in the Protege native writer that prevented some untyped resources from being exported.

'''SWRL'''

* The [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLTab SWRLTab] now supports the [http://www.jboss.org/drools Drools] rule engine. A new tab called the [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLDroolsTab SWRLDroolsTab] provides a graphical interface for interacting with this implementation. The existing [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLJessTab SWRLJessTab] is still available. All existing [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLTabBuiltInLibraries SWRL built-in libraries] are supported in the Drools implementation. Both the Drools and Jess implementations now use a pair of [http://www.w3.org/TR/owl2-profiles/#OWL_2_RL OWL 2 RL]-based reasoners for performing inference ([http://protege.cim3.net/cgi-bin/wiki.pl?SWRLTabOWL2RL read more]). These reasoners are also used by the [http://protege.cim3.net/cgi-bin/wiki.pl?SQWRL SQWRL] query language. The Java APIs provided by the SWRLTab have changed slightly so users of these APIs will need to update their code. Information on these changes can be found [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLTabAPIUpdating here]. The process of building the SWRLTab and its associated rule engines has also changed. The new build process is outlined [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLTabBuilding here].

'''[[BioPortal Import Plugin|BioPortal Import Plug-in]]'''

* Importing is now done in a separate thread, and can be canceled at any time by the user.
* Added the ability to start multiple import processes at the same time.
* Added a progress dialog to show import progress.
* Users may now specify a BioPortal API Key in the BioPortal Configuration dialog (accessible from BioPortal | Configure... | General). This allows access to private ontologies for which users have an API Key.

'''[[Collaborative Protege|Collaborative Protege]]'''

* Users may now add the collab.precache.notes.count property to the protege.properties file for controlling whether or not ontology notes are precached. If set to false, no precaching is done. This improves the start up time of Protege clients for projects that have large numbers of notes.

@@ Line 3: / Line 3: @@
 * [http://protege.stanford.edu/download/protege/3.5/installanywhere/Web_Installers/ Download Protege 3.5]
-* Submit feedback, questions, and/or bug reports on the [http://mailman.stanford.edu/mailman/listinfo/protege-owl Protege 3 mailing list]
+* Submit feedback, questions, and/or bug reports on the [http://mailman.stanford.edu/mailman/listinfo/protege-user protege-user mailing list]
 * [[Protege3UserDocs|Read Protege 3.5 documentation]]
 * Join the Protege community on [http://www.facebook.com/pages/Protege-Project/136205016405270 Facebook] and [http://www.twitter.com/protegeproject Twitter]

@@ Line 2: / Line 2: @@
-* [http://protege.stanford.edu/download/registered.html#p3.5 Download Protege 3.5] (new users, [http://protege.stanford.edu/download/register.html please register first])
+* [http://protege.stanford.edu/download/protege/3.5/installanywhere/Web_Installers/ Download Protege 3.5]
 * Submit feedback, questions, and/or bug reports on the [http://mailman.stanford.edu/mailman/listinfo/protege-owl Protege 3 mailing list]
 * [[Protege3UserDocs|Read Protege 3.5 documentation]]

@@ Line 20: / Line 20: @@
 === Core Protege ===
 * Dialogs are now centered in the main window.
-* System slots can now be selected for export to CSV.
+* System slots can now be selected for export to CSV in the Query Tab.
 * Fixed a bug that prevented the Finish button from being enabled when creating a database project.

← Older revision		Revision as of 01:00, April 25, 2013
Line 44:		Line 44:

	=== Change Management ===		=== Change Management ===
−	* Added Java utilities for exporting changes and notes as CSV files. [http://smi-protege.stanford.edu/repos/protege/change-management/trunk/changesUtil/ Source code] and [http://smi-protege.stanford.edu/repos/protege/change-management/trunk/scripts/ export scripts] are available in our Subversion repository.	+	Added Java utilities for exporting changes and notes as CSV files. [http://smi-protege.stanford.edu/repos/protege/change-management/trunk/changesUtil/ Source code] and [http://smi-protege.stanford.edu/repos/protege/change-management/trunk/scripts/ export scripts] are available in our Subversion repository.

@@ Line 33: / Line 33: @@
 Made significant enhancements to the [[BioPortal Import Plugin|BioPortal Import Plug-in]]:
-* Importing is now done in a separate thread, and can be canceled at any time by the user.
+* Users may now search for terms in all BioPortal ontologies, and navigate to a specific BioPortal ontology to import branches of the class tree.
 * Added the ability to start multiple import processes at the same time.
 * Added a progress dialog to show import progress.
 * Users may now specify a BioPortal API Key in the BioPortal Configuration dialog (accessible from BioPortal | Configure... | General).  This allows access to private ontologies for which users have an API Key.

@@ Line 1: / Line 1: @@
 <br /><span style="font-weight:bold; font-size:22px;">Protege 3.5 Release -- April 24, 2013</span>
-__NOTOC__
 * [http://protege.stanford.edu/download/registered.html#p3.5 Download Protege 3.5] (new users, [http://protege.stanford.edu/download/register.html please register first])
@@ Line 7: / Line 7: @@
 * Join the Protege community on [http://www.facebook.com/pages/Protege-Project/136205016405270 Facebook] and [http://www.twitter.com/protegeproject Twitter]
 '''Note to users of Mac OS X 10.7.5 and above:''' The default [http://support.apple.com/kb/ht5290 Gatekeeper] settings for Mountain Lion are to only allow application downloads from the Mac App Store and identified developers. The Protege software does not carry "identified developer" status, and you may see an error when attempting to download that the installer file is "damaged and can't be opened". To successfully download the installer file, navigate to Apple menu | System Preferences… | Security & Privacy | General tab, and select "Anywhere" from "Allow applications downloaded from".
 == Release Notes ==
 ''This section describes changes relative to Protege 3.4.8''
+=== Core Protege ===
 * Dialogs are now centered in the main window.
 * System slots can now be selected for export to CSV.
 * Fixed a bug that prevented the Finish button from being enabled when creating a database project.
+=== Protege-OWL ===
 * When running in client-server mode, the Protege native writer export is now done in a more efficient way on the server. The performance increase should be significant, especially on slow networks.
 * Fixed a bug in the Protege native writer that prevented some untyped resources from being exported.
-'''SWRL'''
+=== BioPortal Import Plug-in ===
-* The [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLTab SWRLTab] now supports the [http://www.jboss.org/drools Drools] rule engine. A new tab called the [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLDroolsTab SWRLDroolsTab] provides a graphical interface for interacting with this implementation. The existing [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLJessTab SWRLJessTab] is still available. All existing [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLTabBuiltInLibraries SWRL built-in libraries] are supported in the Drools implementation. Both the Drools and Jess implementations now use a pair of [http://www.w3.org/TR/owl2-profiles/#OWL_2_RL OWL 2 RL]-based reasoners for performing inference ([http://protege.cim3.net/cgi-bin/wiki.pl?SWRLTabOWL2RL read more]). These reasoners are also used by the [http://protege.cim3.net/cgi-bin/wiki.pl?SQWRL SQWRL] query language. The Java APIs provided by the SWRLTab have changed slightly so users of these APIs will need to update their code. Information on these changes can be found [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLTabAPIUpdating here]. The process of building the SWRLTab and its associated rule engines has also changed. The new build process is outlined [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLTabBuilding here].
+Made significant enhancements to the [[BioPortal Import Plugin|BioPortal Import Plug-in]]:
 * Importing is now done in a separate thread, and can be canceled at any time by the user.
@@ Line 37: / Line 38: @@
 * Users may now specify a BioPortal API Key in the BioPortal Configuration dialog (accessible from BioPortal | Configure... | General).  This allows access to private ontologies for which users have an API Key.
-'''[[Collaborative Protege|Collaborative Protege]]'''
+Read more about [[Collaborative Protege|Collaborative Protege]].
-* Users may now add the collab.precache.notes.count property to the protege.properties file for controlling whether or not ontology notes are precached. If set to false, no precaching is done.  This improves the start up time of Protege clients for projects that have large numbers of notes.
+=== Change Management ===

← Older revision	Revision as of 00:43, April 25, 2013
(No difference)