Protege-OWL 4 FAQ - Revision history

Samsontu at 23:50, February 17, 2022

2022-02-17T23:50:22Z

Samsontu at 23:44, February 17, 2022

2022-02-17T23:44:21Z

Samsontu at 23:43, February 17, 2022

2022-02-17T23:43:19Z

Samsontu at 20:23, December 22, 2021

2021-12-22T20:23:02Z

Samsontu at 21:18, August 17, 2016

2016-08-17T21:18:21Z

Samsontu at 21:17, August 17, 2016

2016-08-17T21:17:41Z

TaniaTudorache at 03:45, May 24, 2016

2016-05-24T03:45:51Z

JenniferVendetti: /* How do I install Protege Desktop? */

2014-03-12T01:18:55Z

‎How do I install Protege Desktop?

JenniferVendetti: added faq item about damaged installer file on mac

2014-03-12T01:18:35Z

added faq item about damaged installer file on mac

JenniferVendetti: cleaning up documentation to match new website

2014-03-12T01:08:46Z

cleaning up documentation to match new website

@@ Line 52: / Line 52: @@
 * View/Create/Edit/Delete SWRL rules in the "Rules" view
 * Start (Reasoner -> Start reasoner) or synchronize (Reasoner -> Synchronize reasoner) the reasoner (you can also do it with CTRL+R or COMMAND+R on Mac)
-* See results of the execurted rules in you other views
+* See results of the executed rules in you other views
 === What are the pros and cons of DL Query, SPARQL (with OWL entailment regime), and SQWRL===

@@ Line 14: / Line 14: @@
 === Where can I find user documentation for Protege Desktop? ===
-See [http://protegeproject.github.io/protege/ Prot&eacute;g&eacute; 5 Documentation]
+See [http://protegeproject.github.io/protege/ Prot&eacute;g&eacute; 5 Documentation].
-Also refer to the [[Protege4UserDocs#Protege-OWL_Editor|Protege documentation page]] on this wiki for a list of older documentation that uses Prot&eacute;g&eacute; user interface but are still substantially correct.
+Also refer to the [[Protege4UserDocs#Protege-OWL_Editor|Protege documentation page]] on this wiki for a list of older documentation that uses Prot&eacute;g&eacute; 4 user interface but are still substantially correct.
 === Where do I ask questions and report bugs? ===

@@ Line 9: / Line 9: @@
 * [[Protege-OWL_3_FAQ|Protege-OWL 3.x FAQ]]
 * [http://protege.stanford.edu/doc/faq.html Protege-Frames FAQ]
 === How do I install Protege Desktop? ===
-Protege Desktop is [http://protege.stanford.edu/products.php#desktop-protege available for download] from the main Protege website.  If you're new to Protege, we ask that you read about the different installation options currently available to determine which best suits your needs:
+Protege Desktop is [http://protege.stanford.edu/products.php#desktop-protege available for download] from the main Protege website.
 === Where can I find user documentation for Protege Desktop? ===
-Please refer to the [[Protege4UserDocs#Protege-OWL_Editor|Protege documentation page]] on this wiki for a list of available documentation.
+See [http://protegeproject.github.io/protege/ Prot&eacute;g&eacute; 5 Documentation]
 === Where do I ask questions and report bugs? ===

@@ Line 48: / Line 48: @@
 === Why does my ontology contain classes named Error1, Error2, ...? ===
 See the [[Protege4ErrorClasses|Error Classes]] page for a description of this new OWL API feature.
 === How do I edit/use SWRL rules in Protege ===

@@ Line 58: / Line 58: @@
 * See results of the execurted rules in you other views
-=== What the pros and cons of DL Query, SPARQL (with OWL entailment regime), and SQWRL===
+=== What are the pros and cons of DL Query, SPARQL (with OWL entailment regime), and SQWRL===
 A DL Query is a OWL class expression. It
 * Returns results that can be superclasses, subclasses, or individuals of the class expression.

← Older revision		Revision as of 21:17, August 17, 2016
Line 57:		Line 57:
	* Start (Reasoner -> Start reasoner) or synchronize (Reasoner -> Synchronize reasoner) the reasoner (you can also do it with CTRL+R or COMMAND+R on Mac)		* Start (Reasoner -> Start reasoner) or synchronize (Reasoner -> Synchronize reasoner) the reasoner (you can also do it with CTRL+R or COMMAND+R on Mac)
	* See results of the execurted rules in you other views		* See results of the execurted rules in you other views
		+
		+	=== What the pros and cons of DL Query, SPARQL (with OWL entailment regime), and SQWRL===
		+	A DL Query is a OWL class expression. It
		+	* Returns results that can be superclasses, subclasses, or individuals of the class expression.
		+	* Has compact notation
		+	* Cannot use variables, therefore cannot compare values from different properties e.g., (forall all individuals ?x of class C where ?x.length = ?x.width)
		+	* Has limited sets of operators (e.g., can use regular expressions on strings but cannot do arithmetic)
		+	* Uses open-world assumption
		+	* Resolves queries relative to import closure, does not support federated queries
		+	* Is supported by any OWL reasoning system (Protege has GUI for DL queries)
		+
		+	SPARQL query is a graph pattern. It
		+	* Can match against anything against graph patterns.
		+	* Has a rich set of operators and functions on numbers, strings, date/time, and terms
		+	* Is widely supported (although not all SPARQL engine support OWL2 entailment regime)
		+	* Can be resolved against relational databases with mappings (e.g., Ontop)
		+	* Supports federated queries across the net
		+	* Can work with OWL ontology because of formalized OWL to RDF mapping. Complex class expressions have very verbose RDF representation.
		+
		+	SQWRL is an extension of OWL/SWRL. It
		+	* Natively understands OWL
		+	* Allows you to query for individuals only
		+	* Has an extensible collection of built-ins (including the ability to do arithmetic)
		+	* Has set operators that “close the world”
		+	* Allows comparison of values of different properties on the same individual
		+	* Is supported by Protege only
		+	* Does not support federated queries across the net

@@ Line 3: / Line 3: @@
 == Protege Desktop Frequently Asked Questions ==
-<span style="color:red; font-weight:bold;">This FAQ is specific to Protege Desktop, versions 4.0 and above.</span>
+<span style="color:red; font-weight:bold;">This FAQ is specific to Protege Desktop, versions 4, 5 and above.</span>
 If you're working with older versions of Protege, you might find the following alternative FAQs helpful:
@@ Line 22: / Line 22: @@
 === Where can I find user documentation for Protege Desktop? ===
-Please refer to the [[Protege4UserDocs#Protege-OWL_Editor|Protege 4 documentation page]] on this wiki for a list of available documentation.
+Please refer to the [[Protege4UserDocs#Protege-OWL_Editor|Protege documentation page]] on this wiki for a list of available documentation.
 === Where do I ask questions and report bugs? ===
@@ Line 49: / Line 49: @@
 See the [[Protege4ErrorClasses|Error Classes]] page for a description of this new OWL API feature.
-=== How do I edit/use SWRL rules in Protege 4 ===
+=== How do I edit/use SWRL rules in Protege ===
 * Create a new tab (Window -> Views -> Create new tab...) called something like Rules, SWRL or whatever you prefer [OPTIONAL]
 * Select the Window -> Views -> Ontology views -> Rules menu and drop the "Rules" view in a tab (for example the one created in the previous step)

@@ Line 13: / Line 13: @@
 === How do I install Protege Desktop? ===
-Protege Desktop is [http://protege.stanford.edu/products.php#desktop-protege available for download] from the main Protege website.  If you are new to Protege, we ask that you read about the different installation options currently available to determine which best suits your needs:
+Protege Desktop is [http://protege.stanford.edu/products.php#desktop-protege available for download] from the main Protege website.  If you're new to Protege, we ask that you read about the different installation options currently available to determine which best suits your needs:
 * '''InstallyAnywhere platform independent installer program''' - this is the recommended method of installation for beginners and also for users that want a "double-clickable" executable file.  The primary reason we recommend this method for beginners is that Protege Desktop requires a 1.6 version of the Java Virtual Machine to be present.  The installer makes it very easy for you to install the correct version of the Java VM - or - if you already have Java installed, you can indicate the location during the install process.  The installer also provides an executable file that you can double-click to launch Protege Desktop, e.g., "Protege.exe" on Windows, etc.

← Older revision		Revision as of 01:18, March 12, 2014
Line 30:		Line 30:

	Visit our issue tracker on GitHub: https://github.com/protegeproject/protege/issues?state=open.		Visit our issue tracker on GitHub: https://github.com/protegeproject/protege/issues?state=open.
		+
		+	=== Why do I get a message about a damaged installer file on the Mac? ===
		+	OS X users might see the following error message when trying to install Protege Desktop:
		+
		+
		+	[[Image:Mac_damaged_installer_error_msg.png]]
		+
		+
		+	This is a misleading error message from Apple's [http://support.apple.com/kb/ht5290 Gatekeeper] software. By default, Gatekeeper is configured to only allow download and installation of applications from the Mac App Store and identified developers. The Protege Desktop software does not yet carry "identified developer" status. To successfully install Protege Desktop, navigate to Apple menu \| System Preferences… \| Security & Privacy \| General tab, and select "Anywhere" from "Allow applications downloaded from".

	=== Why am I getting "An error related to DOT has occurred" when trying to use the OWLViz plug-in? ===		=== Why am I getting "An error related to DOT has occurred" when trying to use the OWLViz plug-in? ===

@@ Line 1: / Line 1: @@
-<div style="float:right; margin:5px 5px 0px 0px;">__TOC__</div>
+__TOC__<br />
 == Protege Desktop Frequently Asked Questions ==
-This FAQ is specific to Protege Desktop, versions 4.x and above.
+<span style="color:red; font-weight:bold;">This FAQ is specific to Protege Desktop, versions 4.0 and above.</span>
 If you're working with older versions of Protege, you might find the following alternative FAQs helpful:
@@ Line 12: / Line 12: @@
-=== How do I install Protege-OWL? ===
+=== How do I install Protege Desktop? ===
-Protege-OWL is [http://protege.stanford.edu/products.php#desktop-protege available for download] from the main Protege website.  If you are new to Protege-OWL, we ask that you read about the three different installation options currently available to determine which best suits your needs:
+Protege Desktop is [http://protege.stanford.edu/products.php#desktop-protege available for download] from the main Protege website.  If you are new to Protege, we ask that you read about the different installation options currently available to determine which best suits your needs:
-* '''InstallyAnywhere platform independent installer program''' - this is the recommended method of installation for beginners and also for users that want a "double-clickable" executable file.  The primary reason we recommend this method for beginners is that Protege-OWL requires a 1.6 version of the Java Virtual Machine to be present.  The installer makes it very easy for you to install the correct version of the Java VM - or - if you already have Java installed, you can indicate the location during the install process.  The installer also provides an executable file that you can double-click to launch Protege-OWL, e.g., "Protege.exe" on Windows, etc.
+* '''InstallyAnywhere platform independent installer program''' - this is the recommended method of installation for beginners and also for users that want a "double-clickable" executable file.  The primary reason we recommend this method for beginners is that Protege Desktop requires a 1.6 version of the Java Virtual Machine to be present.  The installer makes it very easy for you to install the correct version of the Java VM - or - if you already have Java installed, you can indicate the location during the install process.  The installer also provides an executable file that you can double-click to launch Protege Desktop, e.g., "Protege.exe" on Windows, etc.
-* '''ZIP file''' - we provide a ZIP file for more advanced users that are familiar with how to make sure the proper version of Java is present.  This is also a convenient installation for users that do not require an executable file to launch Protege-OWL.
+* '''ZIP file''' - we provide a ZIP file for more advanced users that are familiar with how to make sure the proper version of Java is present.  This is also a convenient installation for users that do not require an executable file to launch Protege Desktop.
 * '''Application bundle file''' - this is a new offering in Protege 4.1 and above that we hope will be an improvement for OS X users.
-Note that if you are new user, we ask that you register before downloading Protege-OWL.  If you have already registered, simply click on the [http://protege.stanford.edu/download/registered.html download link] and navigate to the [http://protege.stanford.edu/download/registered.html#p4.1 Protege 4 section] of the download page.
+=== Where can I find user documentation for Protege Desktop? ===
 Please refer to the [[Protege4UserDocs#Protege-OWL_Editor|Protege 4 documentation page]] on this wiki for a list of available documentation.