OntoCheck - Revision history

Dschober at 13:33, April 27, 2015

2015-04-27T13:33:11Z

JenniferVendetti: fixed link to screen shot so that it now displays properly

2013-04-25T19:01:30Z

fixed link to screen shot so that it now displays properly

JenniferVendetti at 18:59, April 25, 2013

2013-04-25T18:59:47Z

Dschober at 14:43, April 25, 2013

2013-04-25T14:43:32Z

Dschober at 14:34, April 25, 2013

2013-04-25T14:34:48Z

Dschober at 09:53, April 25, 2013

2013-04-25T09:53:04Z

Dschober: The OntoCheck plugin facilitates labelling error detection and curation, contributing to lexical quality assurance in OWL ontologies.

2013-04-25T09:51:26Z

The OntoCheck plugin facilitates labelling error detection and curation, contributing to lexical quality assurance in OWL ontologies.

New page

{{Plugin
|Description=The OntoCheck P4 plugin allows clean-up checks a generated ontology - e.g. to be stored and carried out before each ontology release. Found test violations can be corrected to foster consistency in entity naming and meta-annotation within an artefact. Once specified, check constraints like name patterns can be stored and exchanged for later re-use. The plugin allows the user to specify checks on certain properties of an active ontology (OntoCheck) and allows for improvements (OntoCure) in the areas of

a) Metadata completeness, e.g. via cardinality checks on mandatory and optional annotation properties

b) Naming Conventions, e.g. via lexical analysis and labeling enforcement for representational units (RU) names and IDs.

This plugin fosters lexical harmonization as e.g. demanded by the OBO Foundry Naming Conventions at http://www.obofoundry.org/wiki/index.php/Naming

A paper describing OntoChecks functionalities can be found at

http://www.ncbi.nlm.nih.gov/pubmed/23046606

|PluginType=Tab Widget
|PluginType2=Project
|ForApplication1=Protege-OWL 4.1
|HomepageURL=http://www.imbi.uni-freiburg.de/ontology/OntoCheck/
|DeveloperID1=Daniel Schober
|DeveloperID2=Ilinca Tudose
|DeveloperID3=Martin Boeker
|LastUpdated=September 25, 2012
|Topic1=Validation
|Topic2=Project Management
|Topic3=Terminologies
|License=Creative Commons open source
|Affiliation1=Institute of Medical Biometry and Medical Informatics (IMBI), University Medical Center, 79104 Freiburg
}}

|free text=}}

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	\|Affiliation1=Institute of Medical Biometry and Medical Informatics (IMBI), University Medical Center, 79104 Freiburg		\|Affiliation1=Institute of Medical Biometry and Medical Informatics (IMBI), University Medical Center, 79104 Freiburg
	}}		}}
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@@ Line 15: / Line 15: @@
 |ForApplication1=Protege-OWL 4.1
 |Screenshot=Figure_1.gif
-|HomepageURL=http://www.imbi.uni-freiburg.de/ontology/OntoCheck/
+|HomepageURL=http://www2.imbi.uni-freiburg.de/ontology/OntoCheck/
 |DeveloperID1=Daniel Schober
 |DeveloperID2=Ilinca Tudose
@@ Line 26: / Line 26: @@
 |Affiliation1=Institute of Medical Biometry and Medical Informatics (IMBI), University Medical Center, 79104 Freiburg
 }}

@@ Line 14: / Line 14: @@
 |PluginType2=Project
 |ForApplication1=Protege-OWL 4.1
-|Screenshot=http://www.imbi.uni-freiburg.de/ontology/OntoCheck/CheckTabNew.png
+|Screenshot=http://protegewiki.stanford.edu/images/5/53/Figure_1.gif
 |HomepageURL=http://www.imbi.uni-freiburg.de/ontology/OntoCheck/
 |DeveloperID1=Daniel Schober
@@ Line 27: / Line 27: @@
 }}
 |free text=}}
 |free text=}}
 |free text=}}

@@ Line 1: / Line 1: @@
 {{Plugin
-|Description=The OntoCheck P4 plugin allows clean-up checks a generated ontology - e.g. to be stored and carried out before each ontology release. Found test violations can be corrected to foster consistency in entity naming and meta-annotation within an artefact. Once specified, check constraints like name patterns can be stored and exchanged for later re-use. The plugin allows the user to specify checks on certain properties of an active ontology (OntoCheck) and allows for improvements (OntoCure) in the areas of
+|Description=The OntoCheck P4 plugin allows to define clean-up checks on a generated owl ontology - e.g. to be stored and carried out before each ontology release. Found test violations can be corrected to foster consistency in entity naming and meta-annotation. Once specified, check-constraints like name patterns can be stored and exchanged for later re-use. The plugin allows the user to specify checks on certain properties of an active ontology (OntoCheck) and allows for improvements (OntoCure) in the areas of
 a) Metadata completeness, e.g. via cardinality checks on mandatory and optional annotation properties
@@ Line 6: / Line 6: @@
 b) Naming Conventions, e.g. via lexical analysis and labeling enforcement for representational units (RU) names and IDs.
-This plugin fosters lexical harmonization as e.g. demanded by the OBO Foundry Naming Conventions at http://www.obofoundry.org/wiki/index.php/Naming
+Thereby this plugin fosters lexical harmonization as e.g. demanded by the OBO Foundry Naming Conventions at http://www.obofoundry.org/wiki/index.php/Naming
-A paper describing OntoChecks functionalities can be found at
+A paper describing OntoChecks functionalities in more detail can be found at
 http://www.ncbi.nlm.nih.gov/pubmed/23046606
@@ Line 27: / Line 27: @@
 }}
 |free text=}}
 |free text=}}