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		<id>https://protegewiki.stanford.edu/api.php?action=feedcontributions&amp;feedformat=atom&amp;user=Pariss</id>
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		<updated>2026-04-16T21:51:25Z</updated>
		<subtitle>User contributions</subtitle>
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	<entry>
		<id>https://protegewiki.stanford.edu/index.php?title=JSave&amp;diff=8539</id>
		<title>JSave</title>
		<link rel="alternate" type="text/html" href="https://protegewiki.stanford.edu/index.php?title=JSave&amp;diff=8539"/>
				<updated>2010-08-31T17:42:06Z</updated>
		
		<summary type="html">&lt;p&gt;Pariss: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Plugin&lt;br /&gt;
|Description=JSave can be used to generate Java class definition stubs for Protege-Frames classes.&lt;br /&gt;
|PluginType=Application&lt;br /&gt;
|ForApplication1=Protege-Frames&lt;br /&gt;
|HomepageURL=http://protegewiki.stanford.edu/index.php/JSave&lt;br /&gt;
|DeveloperID1=Samson Tu&lt;br /&gt;
|LastUpdated=April 24, 2008&lt;br /&gt;
|Topic1=Software Engineering&lt;br /&gt;
|License=Mozilla Public License&lt;br /&gt;
|Affiliation1=Stanford University&lt;br /&gt;
|Affiliation2=Stanford Center for Biomedical Informatics Research&lt;br /&gt;
}}&lt;br /&gt;
&amp;lt;div style=&amp;quot;float:left;&amp;quot;&amp;gt;&lt;br /&gt;
== More Information ==&lt;br /&gt;
&lt;br /&gt;
JSave can be used to generate Java class definition stubs for Protege classes. The top level classes extend DefaultSimpleInstance, so that instances of the generated Java classes are also Protege instances and can use Protege API calls. A developer can add his or her own methods to the Java class definition. Regenerating Java class stubs will update the stubs while preserving user-supplied code. An option of the package allows generation of Java bean access methods and listeners.&lt;br /&gt;
&lt;br /&gt;
=== Installation ===&lt;br /&gt;
&lt;br /&gt;
JSave is available for download from the Protege Web site in the form of a ZIP file:&lt;br /&gt;
&lt;br /&gt;
http://protege.stanford.edu/plugins/jsave/jsave-bin-1.0.zip&lt;br /&gt;
&lt;br /&gt;
Simply unzip the file to a location of your choice on your system, preserving the path names in the ZIP file.&lt;br /&gt;
&lt;br /&gt;
=== Documentation ===&lt;br /&gt;
&lt;br /&gt;
JSave documentation comes with the binary distribution of the application.  After you have unzipped the file on your system, you will find an HTML document entitled &amp;quot;jsave.html&amp;quot; in the root directory.  If you would rather read the documentation without downloading JSave first, you can view jsave.html from the Protege Subversion repository: &lt;br /&gt;
&lt;br /&gt;
http://smi-protege.stanford.edu/svn/jsave/trunk/docs/jsave.html (click the &amp;quot;download&amp;quot; link in the top left corner of the page)&lt;br /&gt;
&lt;br /&gt;
=== Level of Support ===&lt;br /&gt;
&lt;br /&gt;
Author will answer questions via email, fix bugs, and consider new feature requests as time permits.  &lt;br /&gt;
&lt;br /&gt;
&amp;lt;span style=&amp;quot;font-style:italic;&amp;quot;&amp;gt;Any communications concerning JSave should be posted on the [http://mailman.stanford.edu/mailman/listinfo/protege-discussion protege-discussion mailing list].&amp;lt;/span&amp;gt;  &lt;br /&gt;
&lt;br /&gt;
=== Source Code ===&lt;br /&gt;
&lt;br /&gt;
The source code for JSave is available from the Protege subversion repository:&lt;br /&gt;
&lt;br /&gt;
* Browse the code via a Web interface: http://smi-protege.stanford.edu/svn/jsave/trunk/&lt;br /&gt;
* Download the source code with a Subversion client: http://smi-protege.stanford.edu/repos/protege/jsave/trunk/&lt;br /&gt;
&lt;br /&gt;
Alternatively, we have provided the source code and Javadoc together in a ZIP file, which can be downloaded from the Protege Web site:&lt;br /&gt;
&lt;br /&gt;
http://protege.stanford.edu/plugins/jsave/jsave-src-1.0.zip&lt;br /&gt;
&amp;lt;br /&amp;gt;&amp;lt;br /&amp;gt;&lt;br /&gt;
&amp;lt;/div&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==External links==&lt;br /&gt;
[http://mackeeper.zeobit.com/clean-my-mac mac fix]&lt;/div&gt;</summary>
		<author><name>Pariss</name></author>	</entry>

	<entry>
		<id>https://protegewiki.stanford.edu/index.php?title=SWRLTab&amp;diff=8538</id>
		<title>SWRLTab</title>
		<link rel="alternate" type="text/html" href="https://protegewiki.stanford.edu/index.php?title=SWRLTab&amp;diff=8538"/>
				<updated>2010-08-31T17:39:46Z</updated>
		
		<summary type="html">&lt;p&gt;Pariss: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Plugin&lt;br /&gt;
|Description=An extension to Protege-OWL that supports editing and execution of SWRL rules.&lt;br /&gt;
|PluginType=Tab Widget&lt;br /&gt;
|ForApplication1=Protege-OWL&lt;br /&gt;
|Screenshot=SWRLTab.png&lt;br /&gt;
|DeveloperID1=Martin O'Connor&lt;br /&gt;
|LastUpdated=July 6, 2007&lt;br /&gt;
|Topic1=Inference&lt;br /&gt;
|Topic2=Reasoning&lt;br /&gt;
|Affiliation1=Stanford Medical Informatics&lt;br /&gt;
}}&lt;br /&gt;
&amp;lt;div style=&amp;quot;display:block; float:left; width:100%;&amp;quot;&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== More Information ==&lt;br /&gt;
&lt;br /&gt;
The SWRLTab is a development environment for working with [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLLanguageFAQ SWRL] rules in [http://protege.stanford.edu/overview/protege-owl.html Protege-OWL]. It supports the editing and execution of SWRL rules. It also provides mechanisms to allow interoperation with a variety of rule engines and the incorporation of user-defined libraries of methods that can be used in rules. Several libraries are provided. These libraries include collections of mathematical, string, and temporal operators, in addition to operators than can be used to effectively turn SWRL into a query language.&lt;br /&gt;
&lt;br /&gt;
A introduction to the SWRL language can be found [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLLanguageFAQ here]. An explanation on how SWRL can be used as a query language can be found [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLQueryBuiltIns here].&lt;br /&gt;
&lt;br /&gt;
The SWRLTab has several software components:&lt;br /&gt;
&lt;br /&gt;
* '''SWRL Editor''': The editor supports editing and saving of SWRL rules in an OWL ontology. See the [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLEditorFAQ SWRL Editor FAQ] for more details.&lt;br /&gt;
&lt;br /&gt;
* '''SWRL Bridge''': The bridge provides the infrastructure necessary to incorporate rule engines into Protege-OWL to execute SWRL rules. See the [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLRuleEngineBridgeFAQ SWRL Rule Engine Bridge FAQ] for more details. The hope is that bridges for other rule engines will be developed by the Protege-OWL community and than an array of inference mechanism will become available for executing SWRL rules.&lt;br /&gt;
&lt;br /&gt;
* '''SWRL Jess Bridge''': A bridge for the Jess rule engine is provided in the Protege-OWL distribution. A user interface called the [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLJessTab SWRLJessTab] is also provided to interact with this bridge.&lt;br /&gt;
&lt;br /&gt;
* '''SWRL Built-in Bridge''': [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLBuiltInFAQ SWRL built-ins] are user-defined predicates that can be used in SWRL rules. The SWRLTab has a subcomponent called the [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLBuiltInBridge built-in bridge] that provides a mechanism to define Java implementations of SWRL built-ins. These implementations can then be dynamically loaded by the bridge and invoked from a rule engine.&lt;br /&gt;
&lt;br /&gt;
* '''SWRL Built-in Libraries''': A number of built-in libraries are provided by the SWRLTab. These include an implementation of the core SWRL built-ins defined in the [http://www.w3.org/Submission/SWRL/ SWRL Submission] and built-ins for querying OWL ontologies. The libraries are documented [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLTabBuiltInLibraries here].&lt;br /&gt;
&lt;br /&gt;
* '''SWRL Query Tab''': The query tab provides a graphical interface to display the results of SWRL rules that contain [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLQueryBuiltIns query built-ins]. It is documented [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLQueryTab here].&lt;br /&gt;
&lt;br /&gt;
* '''SWRL Query API''': This API provides a JDBC-like Java interface to retrieve the result of SWRL rules containing query built-ins. It is documented [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLQueryAPI here].&lt;br /&gt;
&lt;br /&gt;
* '''SWRL Factory''': The factory provides high-level Java APIs that support the creation and modification of SWRL rules in an OWL ontology. This API can be used by developers who wish to work with SWRL rules in their applications. See the [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLFactoryFAQ SWRL Factory FAQ] for more details.&lt;br /&gt;
&lt;br /&gt;
The SWRLTab is designed to work in Protege-OWL only. However, partial interoperation with Jena is also supported. See [http://protege.cim3.net/cgi-bin/wiki.pl?ProtegeJenaIntegration#nid8KU here] for details.&lt;br /&gt;
&lt;br /&gt;
== Activation ==&lt;br /&gt;
&lt;br /&gt;
The SWRLTab should be visible for all OWL knowledge bases that import the [http://www.daml.org/rules/proposal/swrl.owl SWRL ontology]. It is disabled by default if the loaded knowledge base does not import this file.&lt;br /&gt;
&lt;br /&gt;
To activate the SWRLTab in a project that does not include this ontology, go to Project | Configure in the Protege-OWL GUI and check the &amp;quot;SWRLTab&amp;quot; box. The tab will then appear. The user can then navigate to this tab, whereupon they will be given the option to import the SWRL ontology.&lt;br /&gt;
&lt;br /&gt;
== Papers ==&lt;br /&gt;
&lt;br /&gt;
* &amp;quot;[http://smi-web.stanford.edu/auslese/smi-web/reports/SMI-2005-1080.pdf Supporting Rule System Interoperability on the Semantic Web with SWRL]&amp;quot; M. J. O'Connor, H. Knublauch, S. W. Tu, B. Grossof, M. Dean, W. E. Grosso, M. A. Musen. Fourth International Semantic Web Conference ([http://iswc2005.semanticweb.org/ ISWC2005]), Galway, Ireland, 2005.&lt;br /&gt;
&lt;br /&gt;
== Presentations ==&lt;br /&gt;
&lt;br /&gt;
* [http://protege.cim3.net/file/pub/files/SWRL/SWRLTalkISWC2005.pdf Slides] from 20 minute talk at [http://iswc2005.semanticweb.org/ ISWC2005].&lt;br /&gt;
* [http://protege.cim3.net/file/pub/files/SWRL/SWRLTalkProtegeShortCourse2006.pdf Slides] from 60 minute talk at [http://protege.stanford.edu/shortcourse/protege/200603/ 2006 Protege Short Course].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Installation ==&lt;br /&gt;
&lt;br /&gt;
The SWRLTab is part of Protege-OWL and does not need to be downloaded separately. It has been available since version 3.1 of Protege. However, since many of the SWRLTab components are under active development, the most recent Protege-OWL beta build should be used when possible.&lt;br /&gt;
&lt;br /&gt;
The Protege-OWL distribution does not include any rule engines. If a particular rule engine is used, it must be installed separately. At present, only the Jess rule engine is supported. Information on installing Jess is described [http://protege.cim3.net/cgi-bin/wiki.pl?SWRLJessTab#nid6RJ here].&lt;br /&gt;
&lt;br /&gt;
== Source Code ==&lt;br /&gt;
&lt;br /&gt;
The SWRLTab is open source and all of its source code is bundled with the Protege-OWL source code. This source code is available for download from the [http://smi-protege.stanford.edu/svn/owl/trunk/ Protege-OWL Subversion Repository].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== How can I get help? ==&lt;br /&gt;
&lt;br /&gt;
Questions and comments on the SWRLTab should be sent to the Protege-OWL mailing list (protege-owl at lists dot stanford dot edu). This list is monitored by the developers of the SWRLTab.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&amp;lt;/div&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==External links==&lt;br /&gt;
[http://www.mac-how.net Mac-How]&lt;/div&gt;</summary>
		<author><name>Pariss</name></author>	</entry>

	<entry>
		<id>https://protegewiki.stanford.edu/index.php?title=Protege_Ontology_Library&amp;diff=8526</id>
		<title>Protege Ontology Library</title>
		<link rel="alternate" type="text/html" href="https://protegewiki.stanford.edu/index.php?title=Protege_Ontology_Library&amp;diff=8526"/>
				<updated>2010-08-27T12:59:34Z</updated>
		
		<summary type="html">&lt;p&gt;Pariss: /* OWL ontologies */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;__NOTOC__&lt;br /&gt;
&amp;lt;div style=&amp;quot;background:#F0E6CA; border:1px solid #AE5B08; padding:10px 15px 10px 20px; margin:2em 0 0 0;&amp;quot;&amp;gt;&lt;br /&gt;
=== Welcome to the Protege Ontology Library! ===&lt;br /&gt;
&lt;br /&gt;
This page is organized into the following groupings:&lt;br /&gt;
&lt;br /&gt;
* [[#OWL_ontologies|OWL ontologies]]&lt;br /&gt;
* [[#Frame-based_ontologies|Frame-based ontologies]]&lt;br /&gt;
* [[#Other_ontology_formats|Ontologies in other formats (e.g., DAML+OIL, RDF Schema, etc.)]]&lt;br /&gt;
&lt;br /&gt;
If your ontology is available in multiple formats, please feel free to link to it from multiple sections.&lt;br /&gt;
&lt;br /&gt;
''Please make insertions in alphabetical order.  Thank you !!!''&lt;br /&gt;
&amp;lt;/div&amp;gt;&amp;lt;br /&amp;gt;&lt;br /&gt;
&lt;br /&gt;
== OWL ontologies ==&lt;br /&gt;
&lt;br /&gt;
Information on how to open OWL files from the [http://protege.stanford.edu/overview/protege-owl.html Protege-OWL editor] is available on the main Protege Web site.  See the [http://protege.stanford.edu/doc/owl/getting-started.html#creating_loading Creating and Loading Projects] section of the [http://protege.stanford.edu/doc/owl/getting-started.html Getting Started with Protege-OWL] Web page.  Other ways to search for OWL ontologies include using Google: http://www.google.com/search?q=filetype:owl+owl, or the new Semantic Web search engine called [http://swoogle.umbc.edu/ Swoogle].&lt;br /&gt;
&lt;br /&gt;
* [http://www.aimatshape.net/resources/aas-ontologies AIM@SHAPE Ontologies]: Ontologies pertaining to digital shapes.   Source: [http://www.aimatshape.net/ AIM@SHAPE NoE]  - Advanced and Innovative Models And Tools for the development of Semantic-based systems for Handling, Acquiring, and Processing knowledge Embedded in multidimensional digital objects.&lt;br /&gt;
&lt;br /&gt;
* [http://www.co-ode.org/ontologies/amino-acid/2005/10/11/amino-acid.owl amino-acid.owl]: A small OWL ontology of amino acids and their properties. Source: [http://www.co-ode.org/ontologies/amino-acid/2005/10/11/ Amino Acid Ontology Web site].&lt;br /&gt;
&lt;br /&gt;
* [http://www.ifomis.uni-saarland.de/bfo/ Basic Formal Ontology (BFO)]&lt;br /&gt;
&lt;br /&gt;
* [http://transontology.org/bhakti_gaudiya/bhakti.owl bhakti.owl]: An OWL ontology for the transcendental states of consciousness experienced by practitioners of bhakti-yoga, a form of Vedic consciousness engineering.&lt;br /&gt;
&lt;br /&gt;
* [http://dumontierlab.com/?page=ontologies Biochemical Ontologies]: Over 30 ontologies for knowledge representation and reasoning across scientific domains. Ontologies are normalized into non-disjoint primitive skeletons and complex class expressions for DL reasoning. Ontologies describe atoms, bonds, molecules, macromolecules and the processes they participate in.&lt;br /&gt;
&lt;br /&gt;
* [http://www.biopax.org/ BioPAX]: An OWL ontology for biological pathways, which is primarily used to exchange data between pathway resources.&lt;br /&gt;
&lt;br /&gt;
* [http://www.nbirn.net/birnlex/ BIRNLex]: An ontology created by and for the [http://www.nbirn.net/ Biomedical Informatics Research Network (BIRN)] in order to provide a shared semantic framework in which to annotate BIRN data related to multi-resolutional, cross-species studies of neurodegenerative disease.  BIRNLex follows the OBO Foundry best practices and makes use of other OWL-based OBO ontologies.&lt;br /&gt;
&lt;br /&gt;
* [http://acl.icnet.uk/~mw BreastCancerOntology]: An OWL ontology for describing some features of Breast Cancer; Basic model is stable, but still being fleshed out.&lt;br /&gt;
&lt;br /&gt;
* [http://protege.cim3.net/file/pub/ontologies/camera/camera.owl camera.owl]: An OWL ontology about the individual parts of a photo camera. Source: [http://www.xfront.com/ XFront OWL Tutorial].&lt;br /&gt;
&lt;br /&gt;
* [http://www.bltk.ru/OWL/camera2.owl camera2.owl]: An improved OWL camera ontology based on above one from Roger L. Costello. Contributed by [mailto:igor_bessmertny@hotmail.com Igor Bessmertnyy].&lt;br /&gt;
&lt;br /&gt;
* [http://www.owl-ontologies.com/Cardiology.owl Cardiology.owl]: An ontology to present various cardiology diseases, their symptoms, tests, and complications. Contributed by Rishi.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cellcycleontology.org/ Cell Cycle Ontology (CCO)]: An application ontology for the cell cycle process.&lt;br /&gt;
&lt;br /&gt;
* [http://users.ecs.soton.ac.uk/cm7e09/files/cinemaChain.owl Cinema Chain Ontology]: An ontology for modelling cinemas that have screenings of films. Contributed by [http://ecs.soton.ac.uk/~cm7e09 Connor McCabe]&lt;br /&gt;
&lt;br /&gt;
* [http://kt.ijs.si/software/CNOntology/cno.html CN Ontology]: An OWL ontology presenting the concepts used in collaborative networked organizations with focus on Virtual Organizations Breeding Environment.&lt;br /&gt;
&lt;br /&gt;
* [http://www8.informatik.uni-erlangen.de/IMMD8/Services/cidoc-crm/index.html CIDOC CRM Erlangen Implementation]: An OWL DL ontology implementing the [http://cidoc.ics.forth.gr/ CIDOC CRM] (ISO 21127:2006). &lt;br /&gt;
&lt;br /&gt;
* [http://kaiko.getalp.org/kaiko/ontology/colors.owl Colors] : Color list (690 elements) with standard color representation values (RGB, HSV, etc.) in OWL format. Built from the list found in [http://en.wikipedia.org/wiki/List_of_colors Wikipedia] on the 6th of june 2010. Available under the Creative Commons Attribution-ShareAlike License.&lt;br /&gt;
&lt;br /&gt;
* [http://transontology.org/consciousness/consciousness1.owl consciousness1.owl]: An OWL ontology showing the transcendental background for consciousness according to the ancient Vedic literature.&lt;br /&gt;
&lt;br /&gt;
* [http://on.cs.unibas.ch/owl/1.0/Context.owl Context.owl]: An OWL ontology presenting a generic context model that can be used for describing the structure and elements of context aware systems. It is developed in the context of [http://dbis.cs.unibas.ch/projects/ongoing-projects/loca/dbis_project_view LoCa], a Swiss National Research Project. Contributed by [http://dbis.cs.unibas.ch/team/thorsten-moller/dbis_staff_view Thorsten Möller].&lt;br /&gt;
&lt;br /&gt;
* [http://www.bpiresearch.com/BPMO/2004/03/03/cdl/Countries countries.owl]: The ISO 3166 Code List of countries. Contributed by [http://www.jenzundpartner.de/index.htm Dieter E. Jenz].&lt;br /&gt;
&lt;br /&gt;
* [https://mywebspace.wisc.edu/jpthielman/web/DaycareOntology.htm Daycare.swrl.owl]: A demo ontology about a childcare center showing the use of SWRL for reasoning. Contributed by [mailto:peace@wisc.edu Jane Peace].&lt;br /&gt;
&lt;br /&gt;
* [http://www.nada.kth.se/~mehrana/Delegation.owl Delegation Ontology]: An OWL ontology to describe delegation concepts in the context of Grid computing.&lt;br /&gt;
&lt;br /&gt;
* [http://www.ecs.soton.ac.uk/~aoj04r/resist.owl Dependable Systems Ontology]: Ontology about resilient and dependable systems including threats, failures, faults and errors as used in the [http://www.resist-noe.eu ReSIST] project.&lt;br /&gt;
&lt;br /&gt;
* [http://serdis.dis.ulpgc.es/~a013715/aic/ontologias/ Dietas]: Esto es una ontología en OWL no terminada que simula un dietista.&lt;br /&gt;
&lt;br /&gt;
* [http://dolce.semanticweb.org/ DOLCE]: The Dolce foundational ontology and its extensions provide a domain-independent framework to build ontologies on the basis of highly-reusable patterns. Contributed by [mailto:aldo.gangemi@istc.cnr.it Aldo Gangemi].&lt;br /&gt;
&lt;br /&gt;
* [http://education.state.mn.us/datadictionary/owl/Education.owl Education Ontology]: Ontology for the Minnesota Department of Education based on the National Information Exchange Model (NIEM) structures and ISO/IEC 11179 standards.  This domain includes information about K-12 students, teachers, schools, districts, enrollments, assessments, USDA food and nutrition programs, and on-line courses.  Includes approximately 400 data elements.  A case study will be presented at the Semantic Technology conference in March 2006.  Feedback -&amp;gt; http://www.danmccreary.com.&lt;br /&gt;
&lt;br /&gt;
* [http://trajano.us.es/%7Eisabel/EHR/ EHROntology]: An Electronic Health Records ontology based on openEHR work. Contributed by [http://trajano.us.es/%7Eisabel Isabel Roman Martinez].&lt;br /&gt;
&lt;br /&gt;
* [http://www.iis.nsk.su/persons/ponom/ontologies/ Einstein's riddle]: Have you ever tried to solve the famous Einstein's logic puzzle? It is claimed that only 2% of the world's population can solve it! A Description Logic reasoner can do it for you just in one click. Here you find a formulation of the puzzle in ALCOIF description logic. It contains the original formulation of the puzzle from [http://en.wikipedia.org/wiki/Zebra_puzzle http://en.wikipedia.org/wiki/Zebra_puzzle]. For convenience, all key axioms in the ontology are provided with annotation, a corresponding condition of the puzzle. Just classify this ontology in Protege and get a solution by clicking on individuals! Contributed by [http://www.iis.nsk.su/persons/ponom/ Denis Ponomaryov].&lt;br /&gt;
&lt;br /&gt;
* [http://edesign.ecs.umass.edu/index.php?n=Research.Ontologies Engineering Design Ontologies]:  A suite of ontologies developed at the University of Massachusetts Amherst for representing different aspects of the product development process. &lt;br /&gt;
&lt;br /&gt;
* [http://www.csm.ornl.gov/~7lp/esg-owl/ESG1.1.owl ESG]: An ontology describing very large simulation datasets and related information for climate sciences such as those found in the [http://www.earthsystemgrid.org/ Earth System Grid] project. Contributed by [http://www.csm.ornl.gov/~7lp Line Pouchard].&lt;br /&gt;
&lt;br /&gt;
* [http://protege.cim3.net/file/pub/ontologies/family.swrl.owl/family.swrl.owl family.swrl.owl]: A SWRL/OWL demo ontology about family relationships . Contributed by Christine Golbreich.&lt;br /&gt;
&lt;br /&gt;
* [http://www.osera.gov/owl/2004/11/fea/FEA.owl Federal Enterprise Architecture Reference Model Ontology (FEA-RMO)]: Representation of Federal Enterprise Architecture in OWL.&lt;br /&gt;
&lt;br /&gt;
* [http://www.fadyart.com/ontologies/data/Finance.owl Finance]: an ontology on financial instruments, involved parties, processes and procedures in securtities handling. Contributed by  [http://www.fadyart.com/financeOntologyEN.htm Eddy Vanderlinden].&lt;br /&gt;
&lt;br /&gt;
* [http://loki.cae.drexel.edu/~wbs/ontology/fgdc-csdgm.htm fgdc-csdgm.owl]: Ontology for Content Standard for Digital Geospatial Metadata (CSDGM) of Federal Geographic Data Committee (FGDC). Contributed by Akm Saiful Islam, Bora Beran, Volkan Yargici, and Michael Piasecki.&lt;br /&gt;
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* [http://www.l3s.de/%7Edolog/fsm/index.html fsm.owl]: A simple ontology for finite state machines. Contributed by [http://www.learninglab.de/~dolog/index2.html Peter Dolog].&lt;br /&gt;
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* [http://xmlns.com/foaf/spec/index.rdf FOAF Ontology]: An ontology describes people, the links between them and the things they create and do. Contributed by [http://xmlns.com/foaf/spec/ Dan Brickley and Libby Miller].&lt;br /&gt;
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* [http://protege.cim3.net/file/pub/ontologies/generations/generations.owl generations.owl]: An ontology about family relationships that demonstrates classification. Contributed by [http://www.cs.man.ac.uk/~horridgm Matthew Horridge].&lt;br /&gt;
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* [http://loki.cae.drexel.edu/~wbs/ontology/ Geographic Information Metadata - ISO 19115]: An ontology representing Geographic Information Metadata - (ISO 19115).&lt;br /&gt;
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* [http://i2geo.net/ontologies/current/GeoSkills.owl GeoSkills]: an ontology representing the mathematics competencies, topics, and educational levels for schools of Europe. See the page [http://i2geo.net/xwiki/bin/view/About/GeoSkills about GeoSkills].&lt;br /&gt;
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* [http://loki.cae.drexel.edu/%7Ehow/HydrologicUnits/hu hu.owl]: A hierarchic division of hydrologic units. Contributed by [http://loki.cae.drexel.edu/%7Ehow/Hydrologic_Units_ontology.html Luis Bermudez].&lt;br /&gt;
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* [http://individual.utoronto.ca/hesham/DetailedResearch.htm Infrastructure Product Ontology]: An OWL ontology for utility infrastructure products, their attributes, mechanisms, and measures. Products span all five sectors of utilities (Water, Wastewater, Gas, Electricity, and Telecom).&lt;br /&gt;
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* [http://loki.cae.drexel.edu/%7Ewbs/ontology/list.htm iso-metadata.owl]: Several ISO Geographic Information Ontologies developed with the Protege-OWL editor. Contributed by Akm Saiful Islam, Bora Beran, Luis Bermudez, Stephane Fellah &amp;amp; Michael Piasecki.&lt;br /&gt;
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* [http://protege.cim3.net/file/pub/ontologies/ka/ka.owl ka.owl]: Defines concepts from academic research. Contributed by [http://www.cs.man.ac.uk/%7Ehorrocks/ Ian Horrocks].&lt;br /&gt;
&lt;br /&gt;
* [http://protege.cim3.net/file/pub/ontologies/koala/koala.owl koala.owl]: A simple ontology about humans and marsupials. Contributed by [http://www.knublauch.com/ Holger Knublauch].&lt;br /&gt;
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* [http://lifeeventontology.googlepages.com/leo.owl leo.owl]: A simple ontology about life events within e-Government. Contributed by [http://domen.cukjati.googlepages.com/home Domen Cukjati].&lt;br /&gt;
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* [http://www.estrellaproject.org/lkif-core LKIF Core]: A core ontology of basic legal concepts. Contributed by [http://www.leibnizcenter.org/users/rinke Rinke Hoekstra].&lt;br /&gt;
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* [http://protegewiki.stanford.edu/images/d/de/Monetary_ontology_0.1d.zip Monetary_ontology_0.1d.zip]: A zipped Protégé project of an ontology for currency creation and use. Also contains an &amp;quot;owl&amp;quot;. The objective is an active description of all forms of &amp;quot;money&amp;quot; from barter to clearing systems, from precious metal coinage to debt-based fiat.  It is oriented towards designers of payment systems and community currency systems.  Here is a preview [http://protegewiki.stanford.edu/images/b/b5/Monetary_ontology.gif GIF] image [http://protegewiki.stanford.edu/index.php/Image:Monetary_ontology.gif !]  First begun 2008/05/04 and last updated [http://protegewiki.stanford.edu/index.php/Image:Monetary_ontology_0.1d.zip 2008/05/12]. [http://protegewiki.stanford.edu/index.php/Image:MonetaryOntology.zip v0.0] Contributed by [mailto:hmjbram-protege@yahoo.com Martin &amp;quot;Hasan&amp;quot; Bramwell]&lt;br /&gt;
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* [MCDM ontology]: An ontology of utility functions, for purposes of Multi-Criteria Decision Making (MCDM). See [http://protege.cim3.net/cgi-bin/wiki.pl?SeMCDM the SeMCDM project].&lt;br /&gt;
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* [http://mged.sourceforge.net/ontologies/MGEDOntology.owl MGEDOntology.owl]: An ontology for microarray experiments in support of MAGE v.1. Source: [http://mged.sourceforge.net/ MGED Society].&lt;br /&gt;
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* [MOST ontology]: An ontology of the Media-oriented Systems Transport (MOST). See [http://protege.cim3.net/cgi-bin/wiki.pl?SeMCDM the SeMCDM project].&lt;br /&gt;
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* [http://mackeeper.zeobit.com/mac-backup-software mac backup software] A powerfull tool for the system hard drive recovery&lt;br /&gt;
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* [ftp://ftp1.nci.nih.gov/pub/cacore/EVS/ NCI Thesaurus]: A huge ontology developed by the National Cancer Institute (NCI). Source: [http://ncicb.nci.nih.gov/organization/personnel/core/caBIO/technical_resources/guides/quick_start/core/EVS NCI Enterprise Vocabulary Services].&lt;br /&gt;
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* [http://www.semanticbible.org/ntn/ntn-overview.html New Testament Names]: A semantic knowledge base describing named things (people, places, and other classes) in the New Testament, as well as their attributes and relationships. It includes both an ontology and a substantial amount of instance data. NTNames is part of  [http://www.semanticbible.org/ SemanticBible.org].&lt;br /&gt;
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* [http://protegewiki.stanford.edu/images/7/7c/DomainOntology-NMS.zip NMS-DomainOntology]: A Domain Ontology for the TCP/IP-based SNMP-managed Communication Network Management System. Contributed by: Sameera Abar&lt;br /&gt;
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* [http://protege.cim3.net/file/pub/ontologies/not.galen/not-galen.owl not-galen.owl]: A selective adaptation made in 1995 of an early prototype GALEN model; content is not related to or representative of any current or historical OpenGALEN release. Contributed by [http://www.cs.man.ac.uk/%7Ehorrocks/ Ian Horrocks].&lt;br /&gt;
&lt;br /&gt;
* [http://ise.icu.ac.kr/Ontologies/office-env1.owl office-env1.owl],[http://ise.icu.ac.kr/Ontologies/office-env2.owl office-env2.owl]:  Ontologies for office environment. Contributed by Prakash Kadel&lt;br /&gt;
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* [http://loki.cae.drexel.edu/~wbs/ontology/ogc-gml.htm OGC]: Ontology for Geography Markup Language (GML3.0) of Open GIS Consortium (OGC). Contributed by Contributors: Zafer Defne, Akm Saiful Islam and Michael Piasecki.&lt;br /&gt;
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* [http://www.tssg.org/public/ontologies/omg/mof/2004/MOF.owl OMG - Meta Object Facility]: Ontology representation of the [http://www.omg.org/mof/ OMG-MOF] generated from the OMG Specification (XMI).&lt;br /&gt;
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* [http://www.tssg.org/public/ontologies/omg/qvt/2005/QVT.owl OMG - MOF - Query, View, and Transformations]: Ontology representation of the [http://www.omg.org/technology/documents/modeling_spec_catalog.htm#MOF_QVT OMG-MOF-QVT] generated from the OMG Specification (XMI).&lt;br /&gt;
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* [http://www.tssg.org/public/ontologies/omg/odm/2006/odm_2006_04_03_kludge.owl OMG - Ontology Definition Metamodel (ODM)]: Ontology representation of the [http://www.omg.org/ontology/ OMG-ODM] generated from the OMG Specification (XMI).&lt;br /&gt;
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* [http://www.tssg.org/public/ontologies/omg/uml/2004/UML2-Super-MDL-041007.owl OMG - Unified Modeling Language (UML2)]: Ontology representation of the [http://www.omg.org/technology/documents/modeling_spec_catalog.htm#UML OMG-UML2] generated from the OMG Specification (XMI).&lt;br /&gt;
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* [http://protege.stanford.edu/ontologies/ontoClean/ontoCleanOntology.html OntoClean]: Representation of [http://portal.acm.org/citation.cfm?doid=503124.503150 OntoClean] meta-properties and corresponding constraints as a Protege ontology and a set of PAL constraints.&lt;br /&gt;
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* [http://www.avt.rwth-aachen.de/AVT/index.php?id=730 OntoCAPE]: A large-scale ontology for the domain of chemical process engineering. OntoCAPE is partitioned into 62 sub-ontologies, which can be used individually or as an integrated suite. The sub-ontologies cover high-level topics, such as mereotopology, systems theory, quantities and units,  as well as domain-specific topics such as materials, chemical reactions, or unit operations.&lt;br /&gt;
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* [http://www.ecolleg.org/trms/ontology.html OntoTool]: An ontology that is used to model Task and Tool features for project realization. This ontology contains essential concepts about the relationship between task and tool and frequently asked questions about tool identification.&lt;br /&gt;
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* [http://nmg.upc.edu/~mserrano/ontologies/OSM.htm OSM - Ontology for Support and Management]: An ontology that contains all constructs required for the various versions of the Ontology for Support and [http://www.barlamenterprises.com/ Search Engine Optimization] Management of pervasive services by using ontology-based policy mechanisms run by IST-Context project and the research extensions towards Onto-Context framework to demonstrate advantages when context information is used for controlling management operations.&lt;br /&gt;
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* [http://protege.cim3.net/file/pub/ontologies/people.pets/people+pets.owl people+pets.owl]: From the [http://www.cs.man.ac.uk/%7Ehorrocks/ISWC2003/Tutorial/ ISWC03 tutorial] on OWL by Sean Bechhofer, Ian Horrocks, and Peter Patel-Schneider.&lt;br /&gt;
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* [http://swap.uib.es/ontologies/performance.owl Performance Ontology]: It represents of UML-SPT profile but updates with semantic information and integrates other performance representations. By [http://swap.uib.es/ SWAP Group].&lt;br /&gt;
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* [http://afrodita.rcub.bg.ac.yu/~gasevic/projects/PNO/ Petrinet Semantic Web Infrastructure]: Contributed by [http://www.sfu.ca/~dgasevic/ Dragan Gasevic].&lt;br /&gt;
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* [http://philosurfical.open.ac.uk/ontology/philosurfical.owl PhiloSurfical ontology]: An ontology which extends [http://cidoc.ics.forth.gr/ CIDOC-CRM] and describes various dimensions normally associated to the philosophical domain (people, documents, ideas, events). Contributed by [http://people.kmi.open.ac.uk/mikele/ Michele Pasin], in the context of the [http://philosurfical.open.ac.uk/index.html/ PhiloSURFical] project.&lt;br /&gt;
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* [http://www.co-ode.org/ontologies/ Pizzas]: The OWL ontology used in the Protege-OWL Tutorial. Contributed by [http://www.co-ode.org/ The CO-ODE Project].&lt;br /&gt;
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* [http://www.aifb.uni-karlsruhe.de/Forschungsgruppen/BIK/wi2007/PNOntology.owl Pr/T net Ontology]: An ontology for high-level Petri nets.&lt;br /&gt;
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* [http://ppontology.googlepages.com/ PPOntology]: An OWL ontology for cereal plant protection. Currently, it is developed to encompass the field of diagnosis and treatment of barley disorders.&lt;br /&gt;
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* [http://www.proteinontology.info/ Protein Ontology]: Protein Ontology or PO provides a unified vocabulary for capturing declarative knowledge about protein domain and to classify that knowledge to allow reasoning. Contributed by [http://www.amandeep.org/ Amandeep S. Sidhu].&lt;br /&gt;
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* [http://mav.inf.uth.gr/SWS4HPSC/software/sao/saontology/view/SaOn.owl SaOn-Software Application Ontology]: An example ontology for searching, retrieving and using software applications, components.&lt;br /&gt;
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* [SeMCDM ontology]: The kernel ontology for Semantic Multi-Criteria Decision Making (SeMCDM). See the [http://protege.cim3.net/cgi-bin/wiki.pl?SeMCDM SeMCDM project].&lt;br /&gt;
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* [http://protege.cim3.net/file/pub/ontologies/shuttle/shuttle-crew-ont.owl shuttle-crew-ont.owl]: An ontology about the crew from a space shuttle. Source: [http://orlando.drc.com/SemanticWeb/Topics/Ontology/Ontologies.htm Dynamic Research Corporation].&lt;br /&gt;
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* [http://www.loria.fr/~coulet/ontology/snpontology/version1.3/snpontology_full.owl SNP-Ontology]: An ontology to represent genomic variations, and related concepts. Contributed by [http://www.loria.fr/~coulet/ Adrien Coulet].&lt;br /&gt;
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* [http://www.jaist.ac.jp/~nitun/sort.htm Sort Ontology]: Sort ontology is a model of ontologies where ontological classes are represented as sorts with the principles of identity and individuation. The model consists of four meta-classes: &amp;lt;nowiki&amp;gt;TypeSort&amp;lt;/nowiki&amp;gt;, &amp;lt;nowiki&amp;gt;QuasitypeSort&amp;lt;/nowiki&amp;gt;, &amp;lt;nowiki&amp;gt;RoleSort&amp;lt;/nowiki&amp;gt;, and &amp;lt;nowiki&amp;gt;PhaseSort&amp;lt;/nowiki&amp;gt;. It is intended to enrich the semantics of ontological classes by embedding abstract-level domain independent knowledge (called meta-knowledge) into OWL ontologies.&lt;br /&gt;
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* [http://owlspeakonto.dyndns.info/OwlSpeakOnto.owl Spoken Dialogue Ontology - An ontology for creating spoken dialogues]: This ontology can be used to implement spoken dialogues and store the actual state of the dialogue. The corresponding spoken dialogue manager that interprets dialogues encoded as spoken dialogue ontologies and several dialogue examples can be found on [http://sourceforge.net/projects/owlspeak/ OwlSpeak].&lt;br /&gt;
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* [http://www.articulatesoftware.com/SUMO.owl Suggested Upper Merged Ontology]: A comprehensive set of upper, middle and domain specific ontologies.  A lossy translation as of 5/13/2009 from the original source in a version of Knowledge Interchange Format which is available at [http://www.ontologyportal.org ontologyportal.org].&lt;br /&gt;
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* [http://loki.cae.drexel.edu/%7Ewbs/ontology/model.htm Surface-Water-Model-Ontology]: An ontology for surface water and water quality models currently exists based on the list provided SMIC, US Geological Survey using Protege. Contributed by Akm Saiful Islam. &lt;br /&gt;
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* [http://www.uv.es/~agentes/SVECore.owl SVECore.owl]: A core ontology for developing 3D Semantic Virtual Environments and a simple Domain Specific Ontology for creating a virtual bar ([http://www.uv.es/~agentes/DSOBar.owl DSOBar.owl]). Contributed by [mailto:francisco.grimaldo@uv.es Francisco Grimaldo]. &lt;br /&gt;
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* [http://sweet.jpl.nasa.gov/ontology/ SWEET Ontologies]: A Semantic Web for Earth and Environmental Terminology. Source: [http://www.jpl.nasa.gov/index.html Jet Propulsion Laboratory].&lt;br /&gt;
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* [http://protege.cim3.net/file/pub/ontologies/tambis/tambis-full.owl tambis-full.owl]: A biological science ontology developed by the [http://imgproj.cs.man.ac.uk/tambis/ TAMBIS] project. Contributed by [http://www.cs.man.ac.uk/%7Ehorrocks/ Ian Horrocks].&lt;br /&gt;
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* [http://www.ecolleg.org/trms/ontology.html Tool and Task]: An ontology that is used to model Task and Tool features for project realization. Contributed by [mailto:marek@ciel.pl Marek Szlezak].&lt;br /&gt;
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* [http://www.bltk.ru/OWL/tourism.owl Tourism.owl]: An OWL ontology for creating Semantic Web sites related to tourism. Contributed by [mailto:thdl@mail.ru Tonya Kalinkina].&lt;br /&gt;
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* [http://protege.cim3.net/file/pub/ontologies/travel/travel.owl travel.owl]: A tutorial OWL ontology for a Semantic Web of tourism. Contributed by Holger Knublauch.&lt;br /&gt;
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* [http://lsi.ugr.es/joseluisgs/videojuegos.owl Videogame's Elements Ontology]: A [http://lsi.ugr.es/joseluisgs/videojuegos/ videogame's elements ontology] that is used to model different videogame's properties like playability. Contributed by [mailto:joseluisgs@ugr.es José Luis González] and [mailto:fgutierr@ugr.es Francisco Luis Gutiérrez Vela]. University of Granada, Spain.&lt;br /&gt;
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* [http://www-ist.massey.ac.nz/wop/ WebOfPatterns]: An OWL ontology for object-oriented software design. Used to represent design patterns, a Java client exists that can download these descriptions and scan code for pattern instances.&lt;br /&gt;
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* [http://protege.cim3.net/file/pub/ontologies/wine/wine.owl wine.owl]: An ontology of wines (demonstrates project inclusion). Original source: [http://www.w3.org/TR/owl-guide/wine.rdf WebOnt OWL Guide].&lt;br /&gt;
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* [http://www.geocities.com/mdabulaish/woodontology/ Wood Ontology] — Contributed by [mailto:mdabulaish@rediffmail.com Muhammad Abulaish] and [mailto:lipika@maths.iitd.ernet.in Lipika Dey].&lt;br /&gt;
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* [http://protegewiki.stanford.edu/images/f/f5/WFO.swrl.owl.zip WFO.swrl.owl]: A SWRL/OWL DL ontology about WorkFlow based on WFMC. Contributed by [mailto:Soheil.Qanbari@Gmail.com Soheil Qanbari].  &lt;br /&gt;
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== Frame-based ontologies ==&lt;br /&gt;
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In the context of this page, the phrase &amp;quot;frame-based ontologies&amp;quot; loosely refers to ontologies that were developed using the [http://protege.stanford.edu/overview/protege-frames.html Protege-Frames editor].  For more information on how to open an ontology from the Protege-Frames editor, see the [http://protege.stanford.edu/doc/users_guide/index.html Protege-Frames User's Guide].&lt;br /&gt;
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* [http://protegewiki.stanford.edu/index.php/User:Abhay002 Abhay's Tetrapoda Ontology]: A knowledge model and ontology for Tetrapoda Group&lt;br /&gt;
* [http://mis.hevra.haifa.ac.il/~morpeleg/NewProcessModel/Malaria_PN_Example_Files.html Biological Processes]: A knowledge model of biological processes and functions that is graphical, for human comprehension, and machine-interpretable, to allow reasoning.&lt;br /&gt;
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* [http://www.umweltbundesamt.at/umweltdaten/schnittstellen/cedex/cedex_protege/?&amp;amp;tempL=1 CEDEX]: Representation of CEDEX in Protege. CEDEX is a base ontology for exchange and distributed use of ecological data.&lt;br /&gt;
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* [http://protege.cim3.net/cgi-bin/wiki.pl?DublinCoreProtegeOntology Dublin Core]: Representation of [http://dublincore.org/ Dublin Core] metadata in Protege.&lt;br /&gt;
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* [[Engineering ontologies]]: A set of ontologies for representing systems, their decomposition, connections, requirements and constraints&lt;br /&gt;
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* [http://www.enterprise-architecture.org The Essential Project]: An ontology and knowledge base for describing any organisation's Enterprise Architecture, enabling reasoning and decision support. The Essential Project is the collective name for a set of free, open source, Enterprise Architecture support tools that have been developed for use in conjunction with a variety of Enterprise Architecture approaches and frameworks (including TOGAF). &lt;br /&gt;
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* [http://www.bioinf.mdc-berlin.de/~schober/GandrIntro/ GandrKB (Gene annotation data representation)]: An ontology and knowledge base describing gene functions enabling biologists to annotate (multiple) genes on Affymetrix Microarrays per simple drag and drop. Annotation-concepts and genes can be linked for fast and intuitive context-exploration and extensive querying. Generated gene annotations can be interactively explored as semantic networks with advanced visualisation tools. Contributed by Daniel Schober.&lt;br /&gt;
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* GeneOntologyInProtege: Knowledge acquisition, consistency checking, and concurrency control in Gene Ontology.&lt;br /&gt;
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* [http://www.smi.stanford.edu/projects/intermed-web/guidelines/Protege_Ontology.htm Guideline Interchange Format (GLIF)]: Representation of [http://www.glif.org/ GLIF] in Protege.&lt;br /&gt;
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* [http://protege.stanford.edu/ontologies/HL7RIM/index.html Health Level 7 Data Types and Top-Level RIM Classes]: A Protege representation of the [http://www.hl7.org/ HL7] version 3 data types and top-level classes of the Reference Information Model.  Contributed by [http://www.stanford.edu/~swt/ Samson Tu].&lt;br /&gt;
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* [http://www.klinikum.uni-heidelberg.de/Englische-Version-Promotionsarbeiten.8915.0.html#c17816 HELEN]: The HELEN Guideline representation ontology.&lt;br /&gt;
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* [http://www.ics.mq.edu.au/~borgun/Software.html HL7-RIM]: HL7-RIM as a Protege ontology.  Contributed by Bhavna Orgun.&lt;br /&gt;
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* [http://nets.ii.uam.es/neptuno/iptc/ IPTC Subject Reference System]: RDF Schema and Protege ontology representations of the Subject Reference System.&lt;br /&gt;
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* [http://protege.stanford.edu/ontologies/ontoClean/ontoCleanOntology.html OntoClean]: Representation of [http://portal.acm.org/citation.cfm?doid=503124.503150 OntoClean] meta-properties and corresponding constraints as a Protege ontology and a set of PAL constraints.&lt;br /&gt;
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* [http://pcontology.et.ntust.edu.tw/ Personal Computer - Do It Yourself (PC-DIY)]: An ontology which contains essential concepts about the personal computer and frequently asked questions about Personal Computer - Do It Yourself.&lt;br /&gt;
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* [http://www.getopt.org/ecimf/contrib/onto/REA/index.html Resource-Event-Agent Enterprise (REA)]: An ontology that is used to model economic aspects of e-business frameworks (e.g. in ebXML) and enterprise information systems.&lt;br /&gt;
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* [http://protege.stanford.edu/ontologies/ontologyOfScience/ontology_of_science.htm Science Ontology]: A modified version of the KA² ontology describing research-related information.&lt;br /&gt;
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* [http://protege.stanford.edu/plugins/psmtab/upml_editor.html The Uniform Problem-solving Method development Language (UPML)]: An ontology and editor for modeling libraries of reusable (i.e., generic and adaptable) components of knowledge-based systems, namely tasks, problem-solving methods and domain models.&lt;br /&gt;
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* [http://drtc.isibang.ac.in/~bisu/ontology/instOntology.owl Instituto Kuluwulu]: This is a model to check the reliability of the Wiki Ontology Library. Sorry for this, but we had to do it XD. Por favor no tomen represalias, solo somos estudiantes con ganas de chequear este wiki. We love ontologies.&lt;br /&gt;
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* [http://drtc.isibang.ac.in/~bisu/ontology/instOntology.owl Institutional ontology]: Institutional Ontology is a model of a University/ Institute. This ontology is based on OWL-DL. Few instances is included to check its performance. Also a file called [http://drtc.isibang.ac.in/~bisu/ontology/ query.txt] containing a list of query is provided. Contributed by [mailto:bisu@drtc.isibang.ac.in Biswanath Dutta][http://drtc.isibang.ac.in DRTC, Bangalore]. &lt;br /&gt;
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*[[Workflow ontology]] - A workflow ontology used to capture sequential and state-based workflows as instances in the ontology. Intended to be used by [[Collaborative_Protege]].&lt;br /&gt;
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== Other ontology formats ==&lt;br /&gt;
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* [http://protege.cim3.net/cgi-bin/wiki.pl?DublinCoreProtegeOntology Dublin Core]: Representation of [http://dublincore.org/ Dublin Core] metadata in Protege.&lt;br /&gt;
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* [http://www.30nema31.blogfa.com/cat-21.aspx John mak]: From [http://www.30nema31.blogfa.com/ John mak] Data in Protege.&lt;br /&gt;
&lt;br /&gt;
* [http://www.ics.mq.edu.au/~borgun/Software.html HL7-RIM]: HL7-RIM as a Protege ontology.  Contributed by Bhavna Orgun.&lt;br /&gt;
&lt;br /&gt;
* [http://nets.ii.uam.es/neptuno/iptc/ IPTC Subject Reference System]: RDF Schema and Protege ontology representations of the Subject Reference System.&lt;br /&gt;
&lt;br /&gt;
* [http://www.learninglab.de/~dolog/learnerrdfbindings/ Learner]: An ontology describing Learner features used for personalization in eLearning systems. Created in the context of EU/IST project [http://www.elena-project.org/ Elena].&lt;br /&gt;
&lt;br /&gt;
* [http://afrodita.rcub.bg.ac.yu/%7Egasevic/projects/PNO Petrinet Semantic Web Infrastructure]: Contributed by Dragan Gasevic.&lt;br /&gt;
&lt;br /&gt;
* [http://www.getopt.org/ecimf/contrib/onto/REA/index.html Resource-Event-Agent Enterprise (REA)]: An ontology that is used to model economic aspects of e-business frameworks (e.g., in ebXML) and enterprise information systems.&lt;br /&gt;
&lt;br /&gt;
* [http://www.cs.vu.nl/~mcaklein/unspsc/ Universal Standard Products and Services Classification (UNSPSC)]: A coding system to classify both products and services for use throughout the global marketplace.&lt;br /&gt;
[http://www.example.com link title]&lt;br /&gt;
&lt;br /&gt;
[http://www.w3.org/2002/07/owl#Thing]&lt;/div&gt;</summary>
		<author><name>Pariss</name></author>	</entry>

	<entry>
		<id>https://protegewiki.stanford.edu/index.php?title=OntoViz&amp;diff=8525</id>
		<title>OntoViz</title>
		<link rel="alternate" type="text/html" href="https://protegewiki.stanford.edu/index.php?title=OntoViz&amp;diff=8525"/>
				<updated>2010-08-27T12:54:03Z</updated>
		
		<summary type="html">&lt;p&gt;Pariss: /* Level of Support */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;{{Plugin&lt;br /&gt;
|Description=The OntoViz Tab allows you to visualize Protege ontologies with AT&amp;amp;T's highly sophisticated Graphviz visualization software.&lt;br /&gt;
|PluginType=Tab Widget&lt;br /&gt;
|ForApplication1=Protege-Frames&lt;br /&gt;
|ForApplication2=Protege-OWL&lt;br /&gt;
|ForApplication3=Protege Client-Server&lt;br /&gt;
|Screenshot=OntoViz.gif&lt;br /&gt;
|HomepageURL=http://protegewiki.stanford.edu/index.php/OntoViz&lt;br /&gt;
|DeveloperID1=Michael Sintek&lt;br /&gt;
|LastUpdated=July 11, 2007&lt;br /&gt;
|Topic1=Visualization&lt;br /&gt;
|License=Mozilla Public License.&lt;br /&gt;
|Affiliation1=Stanford University&lt;br /&gt;
|Affiliation2=German Research Center for Artificial Intelligence&lt;br /&gt;
}}&lt;br /&gt;
&amp;lt;div style=&amp;quot;float:left;&amp;quot;&amp;gt;&lt;br /&gt;
__TOC__&lt;br /&gt;
&lt;br /&gt;
== Detailed Description ==&lt;br /&gt;
The OntoViz Tab allows you to visualize Protege ontologies with the help of a highly sophisticated graph visualization software called [http://www.graphviz.org/ Graphviz] from AT&amp;amp;T. The types of visualizations are highly configurable and include:&lt;br /&gt;
* Picking a set of classes or instances to visualize part of an ontology&lt;br /&gt;
* Displaying slots and slot edges&lt;br /&gt;
* Specifying colors for nodes and edges.&lt;br /&gt;
* When picking only a few classes or instances, you can apply various closure operators (e.g., subclasses, superclasses) to visualize their vicinity.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Installation ==&lt;br /&gt;
The OntoViz Tab is bundled with the [http://protege.stanford.edu/download/download.html &amp;quot;full&amp;quot; installation of Protege] (please use version 3.3.1 or 3.4).&lt;br /&gt;
&lt;br /&gt;
Once you have installed Protege, you must also:&lt;br /&gt;
&lt;br /&gt;
a). Install the appropriate version of the [http://www.graphviz.org/ Graphviz] graph visualization software for your platform.&lt;br /&gt;
&lt;br /&gt;
b). Modify your &amp;quot;protege.properties&amp;quot; file to specify where you installed Graphviz. For example, if you installed Graphviz in C:\Program Files\ATT\Graphviz\, you would add the following line to protege.properties:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;dot.command=C\:\\Program\ Files\\ATT\Graphviz\\bin\\dot&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
NOTE: you may need to modify your file structure to match the path in your [[protege.properties]] file. Check [[here|protege.properties]] for more details.&lt;br /&gt;
&lt;br /&gt;
The protege.properties file is located in the root directory of your Protege installation and an example protege.properties file is included in the OntoViz subdirectory for your reference &lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;&amp;lt;protege-install-dir&amp;gt;/plugins/dfki.protege.ontoviz/protege.properties&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
In addition to specifying the path to the Graphviz dot executable, you can set the following optional attributes:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;dot.font=&amp;lt;font-name&amp;gt; (optional; usually Arial)&lt;br /&gt;
&lt;br /&gt;
dot.fontsize=&amp;lt;size-specification&amp;gt; (optional; usually -2 or -3)&lt;br /&gt;
&lt;br /&gt;
dot.fontpath=&amp;lt;path-to-ttf-directory&amp;gt; (needed on some flavors of Unix; on Solaris: /usr/openwin/lib/X11/fonts/TrueType)&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Mac specific notes on installation===&lt;br /&gt;
&lt;br /&gt;
Many thanks go to Andy Spydell for providing the following Macintosh specific instructions for configuring OntoViz and Graphviz. Andy used Mac OS X (10.4):&lt;br /&gt;
&lt;br /&gt;
Download the latest [http://www.pixelglow.com/graphviz/download/ Mac OS X version of Graphviz] (current is 1.13 v16). I chose the disk image version (dmg) version. Upon extracting and mounting, you will find two files contained within the disk image: Graphviz (an Application) and an Examples directory.&lt;br /&gt;
&lt;br /&gt;
Create a directory to hold the Graphviz application and Examples directory at a location of your choice (for example, I created a directory called /Users/andy/Developer/Tools/Graphviz). The disk image is named something like &amp;quot;Graphviz 1.13 (v16)&amp;quot;, which makes a poor directory name due to the spaces, period, and parentheses.&lt;br /&gt;
&lt;br /&gt;
Copy the Graphviz application and Examples directory into your newly created directory.&lt;br /&gt;
&lt;br /&gt;
In the Finder, locate the file named &amp;quot;protege.properties&amp;quot; in the Protege directory, and open it with TextEdit (right-click, open, other, select TextEdit). You need to add a line to the file that tells Protege where to find the Graphviz UNIX executable. For me, the line of text looks exactly like:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;dot.command=/Users/andy/Developer/Tools/Graphviz/Graphviz.app/Contents/MacOS/dot&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
Save and close TextEdit.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;div style=&amp;quot;border: 1px solid pink; padding: 3px;&amp;quot;&amp;gt;''Comment from another Mac user:'' these instructions did not work for me. I added the following property to the protege.properties Property Table (accessible from the File | Preferences... | Property Files tab):&lt;br /&gt;
&lt;br /&gt;
Property = OWLViz.Dot.Path, Value = full path name of location of dot executable&lt;br /&gt;
&lt;br /&gt;
Then it worked for me.&amp;lt;/div&amp;gt;&lt;br /&gt;
&lt;br /&gt;
If you don't see any graphs after you begin using the OntoViz Tab in Protege, verify that the dot.command value does in fact represent the &amp;quot;dot&amp;quot; UNIX executable. The easiest way to do this is with the Terminal and &amp;quot;ls&amp;quot; command. Copy the dot.command value from the protege.properties file and paste it into a Terminal window:&lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;terminal&amp;gt; ls /Users/andy/Developer/Tools/Graphviz/Graphviz.app/Contents/MacOS/dot&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
If the file is not found, you will then need to correct the path value in protege.properties.&lt;br /&gt;
&lt;br /&gt;
== Documentation ==&lt;br /&gt;
&lt;br /&gt;
To enable the OntoViz Tab in Protege, choose the menu item Project -&amp;gt; Configure, check the checkbox next to the entry for the OntoViz tab widget, and click OK.&lt;br /&gt;
&lt;br /&gt;
[[Image:Configure-ontoviz.jpg|none]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== Creating a graph ===&lt;br /&gt;
&lt;br /&gt;
To create a graph, select a class from your ontology in the Classes pane, click the &amp;quot;add class&amp;quot; button in the upper left &amp;quot;Config&amp;quot; area of the tab, check several of the options such as &amp;quot;sub&amp;quot;, &amp;quot;sup&amp;quot;, &amp;quot;slx&amp;quot;, and click the &amp;quot;Create Graph&amp;quot; button. The same process can be used for creating graphs of instances by using the &amp;quot;add instance&amp;quot; instead of the &amp;quot;add class&amp;quot; button. To remove an entry from the Config table, use the &amp;quot;remove class&amp;quot; button.&lt;br /&gt;
&lt;br /&gt;
[[Image:Ontoviz-create-graph.jpg|none]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
Selecting a node in the graph displays the corresponding class in the classes tree (and vice versa):&lt;br /&gt;
&lt;br /&gt;
[[Image:Ontoviz-select-class-in-graph.jpg]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
You can also use the middle and right mouse buttons for zooming:&lt;br /&gt;
&lt;br /&gt;
[[Image:Ontoviz-zoom-in-on-graph.jpg]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
=== Fine tuning your graph ===&lt;br /&gt;
&lt;br /&gt;
To fine tune your graph, e.g., for showing only a part of your ontology, the following options are available:&lt;br /&gt;
&lt;br /&gt;
'''1. Options per class/instance, i.e., per row in the Config table.'''&lt;br /&gt;
&lt;br /&gt;
Check or uncheck any of the following check boxes next to an entry in the Config table:&lt;br /&gt;
* sub - subclass closure&lt;br /&gt;
* sup - superclass closure&lt;br /&gt;
* slx - slot extension&lt;br /&gt;
* isx - inverse slot extension&lt;br /&gt;
* slt - slots&lt;br /&gt;
* sle - slot edges&lt;br /&gt;
* ins - instances&lt;br /&gt;
* sys - system frames&lt;br /&gt;
&lt;br /&gt;
The (simplified) semantics for each row in the table are as follows: &lt;br /&gt;
&lt;br /&gt;
&amp;lt;code&amp;gt;closure := {frame[row]}&amp;lt;/code&amp;gt;&lt;br /&gt;
&lt;br /&gt;
* '''sub/sup:''' compute the subclass and superclass closures if frame is a class (independently; otherwise we would always end up with all classes):&amp;lt;br /&amp;gt;&amp;lt;code&amp;gt;closure := closure U subClosure U supClosure&amp;lt;/code&amp;gt;&lt;br /&gt;
* '''slx/isx:''' for all classes/instances in closure, find the classes/instances that are reachable by a slot of type INSTANCE or CLASS (the maximum depth can be configured on the global options window; default is 1 for classes and 3 for instances):&amp;lt;br /&amp;gt;&amp;lt;code&amp;gt;closure := closure U slotExtension&amp;lt;/code&amp;gt;&lt;br /&gt;
* '''ins:''' add all instances of classes in closure to closure:&amp;lt;br /&amp;gt;&amp;lt;code&amp;gt;closure = closure U instances(closure)&amp;lt;/code&amp;gt;&lt;br /&gt;
* '''slt/sle/sys:''' (globally) mark all frames in closure accordingly&lt;br /&gt;
&lt;br /&gt;
''If sys is not true, in all steps above ignore system classes and slots.''&lt;br /&gt;
&lt;br /&gt;
It is also possible to add a class more than once to the Config table with a different options set. Some examples using the newspaper project might be:&lt;br /&gt;
&lt;br /&gt;
a. Inspect one class in the middle of the ontology, e.g., Employee.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;&lt;br /&gt;
Employee sup slt sys&lt;br /&gt;
Employee sub&lt;br /&gt;
&lt;br /&gt;
shows all superclasses of Employee WITH template slots and all subclasses WITHOUT template slots&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[[Image:Ontoviz-inspect-multiple.jpg]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
b. Show a class and its &amp;quot;template slot neighborhood&amp;quot;, e.g., Newspaper.&lt;br /&gt;
&lt;br /&gt;
&amp;lt;pre&amp;gt;Newspaper sup slx isx sys&amp;lt;/pre&amp;gt;&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
'''2. Options for slots'''&lt;br /&gt;
&lt;br /&gt;
Slots can be configured individually by pressing the colored &amp;quot;S&amp;quot; button. A slot can be configured as &amp;quot;default&amp;quot;, &amp;quot;hidden&amp;quot;, or &amp;quot;configured&amp;quot; (at the moment, a configured slot means that the user selected color and preferred arrow direction). Furthermore, all &amp;quot;default&amp;quot; slots can be hidden (&amp;quot;hide slots as default&amp;quot; check box). To configure a slot, click on the &amp;quot;default&amp;quot; cell in the table.&lt;br /&gt;
&lt;br /&gt;
[[Image:Ontoviz-configure-slots.jpg]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
'''3. Global options'''&lt;br /&gt;
&lt;br /&gt;
The following global options are available in the &amp;quot;Ontoviz Global Options&amp;quot; dialog by clicking on the &amp;quot;Op&amp;quot; button.&lt;br /&gt;
&lt;br /&gt;
* save as gif - save the graph as a GIF image in the directory where the project resides, or in the main Protege directory, if the project has not yet been saved&lt;br /&gt;
* show io :STANDARD-CLASS edges - if this box is checked, instances of (&amp;quot;io&amp;quot;) :STANDARD-CLASS links are shown (results in really huge graphs!)&lt;br /&gt;
* show system own slots - if this box is checked, system own slots are shown (e.g., :NAME), which are not very useful except for debugging system stuff&lt;br /&gt;
* slot edges dashed - use dashed lines for slot edges (useful for printing)&lt;br /&gt;
* show instances only - don't show the classes (useful if you want to inspect complex relationships between many instances)&lt;br /&gt;
* on the colors tab, you can configure colors for nodes and edges.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Global-options.jpg]]  [[Image:Global-options2.jpg]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Screenshots ==&lt;br /&gt;
&lt;br /&gt;
To follow are some additional screenshots of the OntoViz Tab. The graphs were generated using the newspaper example project that comes with all installations of Protege. Please note that these screenshots were created using an older version of Protege.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Ontoviz-simple.gif]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Ontoviz-slot-edges.gif]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Ontoviz-template-slots.gif]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Ontoviz-rdf.gif]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Ontoviz-metaclasses.gif]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Image:Ontoviz-ont-plus-instances.gif]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
== Level of Support ==&lt;br /&gt;
Unsupported. The source code for this tab is available in the Protege Subversion repository.  To view the code, please use this URL:&lt;br /&gt;
&lt;br /&gt;
http://smi-protege.stanford.edu/svn/ontoviz-tab/trunk/&lt;br /&gt;
&lt;br /&gt;
... or, to check out the code, you may use this URL:&lt;br /&gt;
&lt;br /&gt;
http://smi-protege.stanford.edu/repos/protege/ontoviz-tab/trunk/&lt;br /&gt;
&lt;br /&gt;
If you have questions about OntoViz, you can try posting them on the [http://mailman.stanford.edu/mailman/listinfo/protege-discussion protege-discussion mailing list] and someone from the Protege community may be able to help you.&lt;br /&gt;
&lt;br /&gt;
For informational support you can visit [http://www.mac-how.net Mac How] network&lt;br /&gt;
&lt;br /&gt;
&amp;lt;br /&amp;gt;&amp;lt;br /&amp;gt;&lt;br /&gt;
&amp;lt;/div&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Related Links==&lt;br /&gt;
&lt;br /&gt;
[http://hellokittydigitalcamera.net/ '''hello kitty digital camera''']&lt;/div&gt;</summary>
		<author><name>Pariss</name></author>	</entry>

	</feed>