Protege Wiki - User contributions [en]

Main Page

2022-02-17T19:47:03Z

Alexskr: http -> https update

__NOTOC__
= <span style="color:#2c3e50;"> Welcome to the Protégé wiki! </span> =

[[File:WP-classes.png|right|300px|thumb|<span style="color:#2c3e50; font-weight:bold;">[[WebProtege|WebProtégé]] - a powerful collaborative ontology development environment for the Web </span>]]

[[File:Protege-OWL.jpg|right|300px|thumb|<span style="color:#2c3e50; font-weight:bold;">[[Protege4UserDocs|Protégé Desktop]] - a fully-fledged OWL 2 ontology editor for the desktops</span>]]

[https://protege.stanford.edu Protégé] is a free, open-source platform that provides a growing user community with a suite of tools to construct domain models and knowledge-based applications with ontologies.

''' Quick links: [https://webprotege.stanford.edu WebProtégé server], Protégé Desktop [https://protege.stanford.edu/products.php#desktop-protege download] and [https://github.com/protegeproject/protege-distribution/releases release notes], [https://github.com/protegeproject/ Source code on GitHub], [https://protege.stanford.edu Protégé website] '''

= <span style="color:#2c3e50;"> User Documentation </span>=

=== <span style="color:#2c3e50;"> WebProtégé </span> ===
* [[WebProtege|Overview]]
* [[WebProtegeUsersGuide|User's Guide]]
* [https://github.com/protegeproject/webprotege/wiki/WebProtégé-4.0.0-beta-x-Installation Administrator's Guide] - download and installation instructions
* Use WebProtégé now on our Stanford-hosted server: http://webprotege.stanford.edu

=== <span style="color:#2c3e50;"> Protégé Desktop </span> ===
* [http://protegeproject.github.io/protege/ Protégé Desktop documentation] ([https://github.com/protegeproject/protege-distribution/releases release notes], [http://protegeproject.github.io/protege/installation/ installation instructions], [http://protege.stanford.edu/products.php#desktop-protege Protege Desktop download], [[Protege_Desktop_Old_Versions|older Protege releases download]])
* [[Protege3UserDocs|Older Protégé releases documentation (version 3.x)]]
* [[Protege-OWL_4_FAQ|Frequently Asked Questions (FAQ)]]

=== <span style="color:#2c3e50;"> Tutorials and Getting Started</span> ===
* [http://protege.stanford.edu/publications/ontology_development/ontology101.html Ontology Development 101: A Guide to creating your first ontology]
* [http://www.cs.man.ac.uk/~stevensr/menupages/background.php Brief introduction to ontologies], by Robert Stevens
* [http://owl.cs.manchester.ac.uk/publications/talks-and-tutorials/protg-owl-tutorial/ Protégé OWL Tutorial: A step-by-step guide to modeling in OWL using the Protégé OWL tools]
* Semantic Web Best Practices and Deployment Working Group's [http://www.w3.org/2001/sw/BestPractices/Tutorials Semantic Web Tutorials] page
* [[Protege4GettingStarted | Getting started with the Protege Desktop editor]] - a short guide to the interface
* [[Pr4_UG | Protege Desktop User's Guide]] - a guide on how to use Protege to create, edit, and inspect ontologies
* [[Protege4Pizzas10Minutes | Pizzas in 10 minutes: A demo of modeling shortcuts]] - a quickstart guide to creating your first OWL ontology
* Cody Burleson's [http://www.semanticfocus.com/blog/entry/title/introduction-to-semantic-web-vision-and-technologies-part-5-building-owl-ontologies-using-protege-4-screencast/ screencast] version of the Protege OWL Pizza tutorial (listed above).
* [http://arxiv.org/abs/1201.4089 A Description Logic Primer]

= <span style="color:#2c3e50;"> Developer Documentation </span> =

=== <span style="color:#2c3e50;"> WebProtégé </span> ===

Please see the [https://github.com/protegeproject/webprotege WebProtégé GitHub page]

=== <span style="color:#2c3e50;"> Protégé Desktop </span> ===
* [[Protege5DevDocs|Protégé Desktop 5.x]]
* [[Protege4DevDocs|Protégé Desktop 4.x]]
* [[Protege3DevDocs|Protégé Desktop 3.x]]

* [[ProtegeQAGuide|Guide to Quality Assurance]]

= <span style="color:#2c3e50;"> Download and Support </span> =

To download Protégé or WebProtégé please visit our [http://protege.stanford.edu homepage]. To use the WebProtégé server hosted at Stanford, please go to: http://webprotege.stanford.edu.

To find out about the different support options, for example, how to subscribe to our mailing lists, please visit the [http://protege.stanford.edu/support.php Support page].

Follow our [http://www.youtube.com/user/TheProtegeProject YouTube channel] featuring screencasts showing different features of Protégé and WebProtégé.

= <span style="color:#2c3e50;"> Wiki Help </span> =
If you are new to using a Wiki, please see the [[Help:Contents|Help page]] page for links to User's Guides, etc.

The [[Help:Contents|Help page]] also has suggestions for where to find help with using the Protégé application.

WebProtege

2013-04-10T17:33:11Z

Alexskr: /* References */

<span style="font-weight:bold; font-size:22px;">WebProtégé</span> <br /><br />

'''WebProtégé is an open source, lightweight, web-based ontology editor. WebProtégé provides a friendly and highly configurable user interface that can be adapted for the use of domain experts. It has support for form-based editing and full-fledged collaboration. ''' <br />

<div class="orangeBox">
'''LATEST ACTIVITY:'''

'''12 Jan 2013:''' New release of WebProtege beta 2.0!
<ul>
<li>[http://webprotege-beta.stanford.edu WebProtege 2.0 Demo server]</li>
<li>[[WebProtégé_2.0_Beta_Release_Notes|Release notes]]</li>
</ul>

'''10 Oct 2012:''' WebProtege 2.0 Webinar
<ul>
<li>See recorded [http://www.bioontology.org/ontology-editing-and-publishing-using-webprotege-and-bioportal NCBO webcast] on publishing and editing OWL2 and OBO ontologies with WebProtege 2.0</li>
</ul>

'''19 Sept 2012:''' [[WebProtegeAdminGuide|WebProtégé 1.0 RC1]] now available!
<ul>
<li>[http://webprotege.stanford.edu WebProtege 1.0 Demo server]</li>
<li>[[WebProtegeAdminGuide|Download and Admin guide]]</li>
</ul>

</div><br />

''Help us evaluate WebProtégé by taking a [http://www.surveymonkey.com/s/ProtegeSurvey2012 3-minute survey].''

__TOC__

== Documentation ==

=== [[WebProtegeUsersGuide|User's Guide]] ===
A short [[WebProtegeUsersGuide|user guide]] with screenshots describing the main user interface elements in WebProtégé.

=== [[WebProtegeAdminGuide|Download and Install - Administrator's Guide]] ===
A [[WebProtegeAdminGuide|step-by-step guide]] for site administrators who want to download and install WebProtégé.

=== [[WebProtegeDevelopersGuide|Developer's Guide]] ===
A [[WebProtegeDevelopersGuide|guide]] for developers who want to compile and run WebProtégé from an IDE.

== Screenshots ==

'''Viewing the class tree and class details for the [http://www.cancer.gov/cancertopics/cancerlibrary/terminologyresources NCI Thesaurus] ontology:'''

[[Image:WP_NCITh.png]]

'''Creating a custom tab for viewing and editing the classes and properties in an ontology:'''

[[Image:WP_ClsAndPropTab.png]]

'''A customization of the WebProtégé layout for the editing of ICD-11 (more info [http://bmir.stanford.edu/publications/view.php/supporting_the_collaborative_authoring_of_icd_11_with_webprotg here]):'''

[[Image:ICATDemo.png]]

==[[WebProtegeRoadMap|WebProtégé Roadmap]] ==

To see what our future plans for WebProtégé are, and to add feature requests, please go to the [[WebProtegeRoadMap|WebProtégé roadmap]] wiki page.

== About WebProtégé ==
WebProtégé is currently under development by the [http://protege.stanford.edu/aboutus/aboutus.html Protégé team] at the [[Affiliated with::Stanford Center for Biomedical Informatics Research]].

== References ==

* A WebProtege paper describing its architecture, features and use in real-world cases is published in the Semantic Web Journal, and is available [http://www.semantic-web-journal.net/content/webprot%C3%A9g%C3%A9-distributed-ontology-editor-and-knowledge-acquisition-tool-web here].

* Several papers describing the use of WebProtégé in real use cases can be found [http://bmir.stanford.edu/publications/by_author.php/tania_tudorache here].

* WebProtégé is a web-client for [[Collaborative Protégé]] - a Protégé extension that supports the collaborative ontology development process.

* Collaborative Protégé and WebProtégé tutorial at the 11th Intl. Protégé Conference in Amsterdam. Slides are available [http://protege.stanford.edu/conference/2009/slides/CollabProtegeTutorial.pdf here].

== How to cite WebProtégé ==

T. Tudorache, C.I. Nyulas, N.F. Noy, M.A. Musen. WebProtégé: A Collaborative Ontology Editor and Knowledge Acquisition Tool for the Web, Semantic Web Journal, IOS Press, 2011

Online version available [http://www.semantic-web-journal.net/content/webprot%C3%A9g%C3%A9-distributed-ontology-editor-and-knowledge-acquisition-tool-web here].

== Contact Us ==
If you have questions or comments, please post them on the [https://mailman.stanford.edu/mailman/listinfo/webprotege-feedback WebProtégé mailing list].<br /><br /><br />

[[Category:Application]]
[[Category:WebProtege documentation]]

Widget:YouTube

2010-04-15T00:17:37Z

Alexskr: Created page with '<noinclude> This widget allows you to add YouTube video player to your wiki page. It was created by [http://www.mediawikiwidgets.org/User:Yaron_Koren Yaron Koren]. == Using thi…'

<noinclude>
This widget allows you to add YouTube video player to your wiki page.

It was created by [http://www.mediawikiwidgets.org/User:Yaron_Koren Yaron Koren].

== Using this widget ==
For information on how to use this widget, see [http://www.mediawikiwidgets.org/YouTube widget description page on MediaWikiWidgets.org].

== Copy to your site ==
To use this widget on your site, just install [http://www.mediawiki.org/wiki/Extension:Widgets MediaWiki Widgets extension] and copy [{{fullurl:{{FULLPAGENAME}}|action=edit}} full source code] of this page to your wiki as '''{{FULLPAGENAME}}''' article.
</noinclude><includeonly><object width="425" height="355"><param name="movie" value="http://www.youtube.com/v/"></param><param name="wmode" value="transparent"></param><embed src="http://www.youtube.com/v/" type="application/x-shockwave-flash" wmode="transparent" width="425" height="355"></embed></object></includeonly>

WebProtege

2010-04-08T01:05:40Z

Alexskr:

<p style="padding:0; margin:0; font-size:1.9em; font-weight:bold; word-spacing:-2px;">WebProtege</p>

<div style="background:#F7F7F7; border:1px solid #999999; padding:1em; width:75%;">
'''[[ID::WebProtege]]''' is an open source, lightweight, web-based ontology editor. Our main goal in developing WebProtege is to support the process of collaborative ontology development in a web environment. Try out WebProtege on our '''demo server''':

<b>http://webprotege.stanford.edu</b>

'''14 Aug 2009:''' build 200 now available<br />
'''01 Aug 2009:''' build 103 now available - compatible with Protege 3.4.1 release and upgraded to GWT 1.7<br />
'''03 Apr 2009:''' build 102 now available - compatible with Protege 3.4 release<br />
'''26 Oct 2008:''' We are very pleased to announce the initial release of WebProtege 0.5 alpha

'''[[WebProtegeReleaseNotes|View Release Notes]]'''<br />
'''[[WebProtegeAdminGuide|View Download Instructions]]'''

<div style="color:#CC0000;font-weight:bold;">Help us evaluate WebProtege by taking a [http://www.surveymonkey.com/s.aspx?sm=WuTpnqnBem7JD77fSFDJLQ_3d_3d 3-minute survey].</div>
</div>

__TOC__

== Documentation ==

=== [[WebProtegeUsersGuide|User's Guide]] ===
A short [[WebProtegeUsersGuide|user guide]] with screenshots describing the main user interface elements in WebProtege.

=== [[WebProtegeAdminGuide|Download and Install - Administrator's Guide]] ===
A [[WebProtegeAdminGuide|step-by-step guide]] for site administrators who want to download and install WebProtege.

=== [[WebProtegeDevelopersGuide|Developer's Guide]] ===
A [[WebProtegeDevelopersGuide|guide]] for developers who want to compile and run WebProtege from an IDE.

== Screenshots ==

'''Viewing the list of available ontologies on the server:'''

[[Image:Webprotege-Mywebprotege.png|thumb|none|800px|My WebProtege tab]]

'''Viewing the class tree for the NCI Thesaurus:'''

[[Image:Webprotege-nci.png|thumb|none|800px|Classes tab]]

==[[WebProtegeRoadMap|WebProtege Roadmap]] ==

To see what our future plans for WebProtege are, and to add feature requests, please go to the [[WebProtegeRoadMap|WebProtege roadmap]] wiki page.

== About WebProtege ==
WebProtege is currently under development by the [http://protege.stanford.edu/aboutus/aboutus.html Protege team] at the [[Affiliated with::Stanford Center for Biomedical Informatics Research]].

== References ==

* A short paper describing WebProtege was presented as a poster at [http://www.webont.org/owled/2008dc/ OWLED 2008]. The paper is available for [http://www.webont.org/owled/2008/papers/owled2008eu_submission_40.pdf download from the OWLED website].

* WebProtege is a web-client for [[Collaborative Protege]] - a Protege extension that supports the collaborative ontology development process.

* Collaborative Protege and WebProtege tutorial at the 11th Intl. Protege Conference in Amsterdam. Slides are available [http://protege.stanford.edu/conference/2009/slides/CollabProtegeTutorial.pdf here]

== Contact Us ==
If you have questions or comments, please post them on the [http://mailman.stanford.edu/mailman/listinfo/protege-discussion protege-discussion mailing list].<br /><br /><br />

[[Category:Application]]
[[Category:WebProtege documentation]]

File:Test.zip

2009-08-12T18:35:20Z

Alexskr:

Form:AddNewTopic

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<nowiki>

{{Topic|
TopicID={{PAGENAME}}}}

</nowiki>

Template:AddNewTopic

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#REDIRECT [[Form:AddNewTopic]]

Form:AddNewPluginVersion

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<nowiki>

{{VersionOfPlugin|
VersionOf= name of PLUGIN |
Number= version number |
LastUpdate= last update of plugin version|
File= URL for downloading version |
CompatibleWith1= a version of Protégé this plugin version is compatible with
!!! UP TO 9 possible PARAMETERS CompatibleWith[1-9] |
DependsOn1= a plugin which is necessary to run this version
!!! UP TO 9 possible PARAMETERS DependsOn[1-9] |
Changelog= describe changes (to previous versions for example) }}

</nowiki>

Forms:AddNewPluginVersion

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#REDIRECT [[Form:AddNewPluginVersion]]

Form:AddNewPlugin

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<nowiki>

{{Plugin|
PluginID= this HAVE TO BE the same as title of this page |
PluginType= a type for this plugin, available: Slot Widget, Tab Widget, Backend, API, Import Export, Project) |
Screenshot= already uploaded picture |
DeveloperID1= first and last name of developer
!!! UP TO 9 possible PARAMETERS DeveloperID[1-9] |
LastUpdated= date of last changes, new versions or updates |
HomepageURL= URL of plugin website NOT download site which will be provided by a version |
Topic1= topic of this plugin
!!! UP TO 9 possible PARAMETERS Topic[1-9] |
License= type of license |
Affiliation1= organisation this plugin is affiliated to
!!! UP TO 9 possible PARAMETERS Affiliation[1-9] |
Description= SHORT!!! description }}

</nowiki>

Forms:AddNewPlugin

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#REDIRECT [[Form:AddNewPlugin]]

Form:AddNewOrganization

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<nowiki>

{{Organization|
OrganizationID= Name of Organization HAVE TO BE the same as page title |
Email= EMail |
HomepageURL= URL of Website |
Phone= Phone Number |
Description= SHORT!!! description }}

</nowiki>

Forms:AddNewOrganization

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#REDIRECT [[Form:AddNewOrganization]]

Form:AddNewPluginVersion

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Template:AddNewPluginVersion

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Form:AddNewPlugin

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<nowiki>

{{Plugin|
PluginID= this HAVE TO BE the same as title of this page |
PluginType= a type for this plugin, available: Slot Widget, Tab Widget, Backend, API, Import Export, Project) |
Screenshot= already uploaded picture |
DeveloperID1= first and last name of developer
!!! UP TO 9 possible PARAMETERS DeveloperID[1-9] |
LastUpdated= date of last changes, new versions or updates |
HomepageURL= URL of plugin website NOT download site which will be provided by a version |
Topic1= topic of this plugin
!!! UP TO 9 possible PARAMETERS Topic[1-9] |
License= type of license |
Affiliation1= organisation this plugin is affiliated to
!!! UP TO 9 possible PARAMETERS Affiliation[1-9] |
Description= SHORT!!! description }}

</nowiki>

Template:AddNewPlugin

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#REDIRECT [[Forms:AddNewPlugin]]

Form:AddNewOrganization

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<nowiki>

{{Organization|
OrganizationID= Name of Organization HAVE TO BE the same as page title |
Email= EMail |
HomepageURL= URL of Website |
Phone= Phone Number |
Description= SHORT!!! description }}

</nowiki>

Template:AddNewOrganization

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#REDIRECT [[Forms:AddNewOrganization]]

Form:AddNewApplicationVersion

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<nowiki>

{{VersionOfApplication|
VersionOf=Protégé|
LastUpdate= date of last update|
Number= version number |
File= URL for downloading this version |
Changelog= describe changes (to previous versions for example) }}

</nowiki>

Template:AddNewApplicationVersion

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#REDIRECT [[Form:AddNewApplicationVersion]]

File:GridSQLSqlReference.PDF

2008-05-06T16:47:12Z

Alexskr:

Help:Contents

2008-02-12T20:03:11Z

Alexskr:

== Wiki Help ==

=== Users ===
* Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using MediaWiki software.
* [http://www.mediawiki.org/wiki/Help:FAQ MediaWiki FAQ]
* Browse the [http://semantic-mediawiki.org/index.php/Help:Semantics Semantic MediaWiki documentation] to learn more about the semantic underpinnings of this Wiki.

=== Administrators ===
* [http://ontoworld.org/wiki/Semantic_MediaWiki Semantic MediaWiki] extension installed
* [http://www.mediawiki.org/wiki/Help:Configuration_settings Configuration settings list]

== Protege Help ==
If you are looking for help on how to use Protege, a good place to start is the Documentation section of the Protege Website: http://protege.stanford.edu/doc/users.html. We also have a number of mailing lists to which you can subscribe and post questions. More information about mailing lists and list archives is available in the Community section of the Protege Website: http://protege.stanford.edu/community/lists.html

Template:Organization

2007-07-11T17:41:30Z

Alexskr: 1 revision(s)

<includeonly>{{PluginWikiHeader|ID={{{OrganizationID}}}}}<div style="display:block;float:left;width:100%;"><div class="PluginSidebar">
{| cellspacing="0" cellpadding="5" class="PluginWikiInfoBox"
|-
| class="InfoBoxColFirst" | Email || {{ #if: {{{Email|}}} | [[Email:={{{Email}}}|[mailto:{{{Email}}} {{{Email}}}]]] | not available }}
|-
| class="InfoBoxCol" | Homepage || {{ #if: {{{HomepageURL|}}} | [[Homepage:={{{HomepageURL}}}|[{{{HomepageURL}}} {{PAGENAME}} website]]] | not available }}
|-
| class="InfoBoxCol" | Phone || {{ #if: {{{Phone|}}} | [[Phone:={{{Phone}}}]] | not available }}
|}
</div>

[[Description:={{{Description}}}]]

<div style="display:block;width:64%;">
==Plugins==
This section shows all plugins which are affiliated to [[ID:={{{OrganizationID}}}|{{{OrganizationID}}}]].

<ask header="none" format="broadtable" default="no plugins affiliated yet">
[[Category:Plugin]] [[Affiliated to::{{PAGENAME}}]]
</ask>

<div style="display: block;float:left;background:#E6FFCC;border:1px solid #B0FF5C;padding: 5px 0px 5px 0px;margin:1em 0 2em 0;">
<inputbox>
type=create
align=left
break=no
buttonlabel=Add New Plugin
bgcolor=#E6FFCC
preload=Template:AddNewPlugin
</inputbox>
</div>

== Members ==
This section shows registered users of ''PluginWiki'' which have annotated their page with '''[[:Category:Person]]''' and '''[[:Relation:Member of]]'''.

<ask format="table">
[[User:+]] [[member of::{{PAGENAME}}]]
</ask>

</div>
</div>
{{Toc}}

[[Category:Organization]]

</includeonly><noinclude>
{{{{FULLPAGENAME}}/doc}}
</noinclude>

Template:Organization/doc

2007-07-11T17:41:30Z

Alexskr: 1 revision(s)

[[Template:Organization]] should be used to create a new page for an organization.

The following parameters have to be provided:

*OrganizationID
*Email
*HomepageURL
*Phone
*Description

<includeonly>

</includeonly>

Template:Plugin

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Alexskr: 1 revision(s)

<includeonly>{{PluginWikiHeader|ID={{{PluginID}}}|{{ #if:{{{DeveloperID1|}}} | Author1={{{DeveloperID1}}} }}}}<div class="PluginSidebar">{{ #if: {{{Screenshot|}}} | <p>[[Screenshot:={{{Screenshot}}}|[[Image:{{{Screenshot}}}|thumb|100%|center|Screenshot]]]]</p> | }}
{| class="PluginWikiInfoBox" cellspacing="0" cellpadding="5"
|-
| class="InfoBoxColFirst" | Type || {{ #if:{{{PluginType|}}} | [[has PluginType::{{{PluginType}}}]] | not available }}
|-
| class="InfoBoxCol" | Developed by || {{ #if:{{{DeveloperID1|}}} | [[developed by::{{{DeveloperID1}}}|{{{DeveloperID1}}}]] | not available }}{{ #if:{{{DeveloperID2|}}} | , [[developed by::{{{DeveloperID2}}}|{{{DeveloperID2}}}]] | }}{{ #if:{{{DeveloperID3|}}} | , [[developed by::{{{DeveloperID3}}}|{{{DeveloperID3}}}]] | }}{{ #if:{{{DeveloperID4|}}} | , [[developed by::{{{DeveloperID4}}}|{{{DeveloperID4}}}]] | }}{{ #if:{{{DeveloperID5|}}} | , [[developed by::{{{DeveloperID5}}}|{{{DeveloperID5}}}]] | }}{{ #if:{{{DeveloperID6|}}} | , [[developed by::{{{DeveloperID6}}}|{{{DeveloperID6}}}]] | }}{{ #if:{{{DeveloperID7|}}} | , [[developed by::{{{DeveloperID7}}}|{{{DeveloperID7}}}]] | }}{{ #if:{{{DeveloperID8|}}} | , [[developed by::{{{DeveloperID8}}}|{{{DeveloperID8}}}]] | }}{{ #if:{{{DeveloperID9|}}} | , [[developed by::{{{DeveloperID9}}}|{{{DeveloperID9}}}]] | }}
|-
| class="InfoBoxCol" | Last Update || {{ #if:{{{LastUpdated|}}} | [[Last update:={{{LastUpdated}}}]] | not available }}
|-
| class="InfoBoxCol" | Current Version || [[Current version:=<ask format="template" template="CurrentVersion" limit="1" searchlabel="" sort="Version number" order="descending" default="no version available">[[Category:Version]] [[version of::{{PAGENAME}}]] [[Version number:=*]]</ask>]]
|-
| class="InfoBoxCol" | Homepage || {{ #if:{{{HomepageURL|}}} | [[Homepage:={{{HomepageURL}}}|[{{{HomepageURL}}} {{PAGENAME}} Website]]] | not available }}
|-
| class="InfoBoxCol" | Application || [[for application::Protégé]]
|-
| class="InfoBoxCol" | Topics || {{ #if:{{{Topic1|}}} | *[[has topic::{{{Topic1}}}|{{{Topic1}}}]] | }}{{ #if:{{{Topic2|}}} | *[[has topic::{{{Topic2}}}|{{{Topic2}}}]] | }}{{ #if:{{{Topic3|}}} | *[[has topic::{{{Topic3}}}|{{{Topic3}}}]] | }}{{ #if:{{{Topic4|}}} | *[[has topic::{{{Topic4}}}|{{{Topic4}}}]] | }}{{ #if:{{{Topic5|}}} | *[[has topic::{{{Topic5}}}|{{{Topic5}}}]] | }}{{ #if:{{{Topic6|}}} | *[[has topic::{{{Topic6}}}|{{{Topic6}}}]] | }}{{ #if:{{{Topic7|}}} | *[[has topic::{{{Topic7}}}|{{{Topic7}}}]] | }}{{ #if:{{{Topic8|}}} | *[[has topic::{{{Topic8}}}|{{{Topic8}}}]] | }}{{ #if:{{{Topic9|}}} | *[[has topic::{{{Topic9}}}|{{{Topic9}}}]] | }}
|-
| class="InfoBoxCol" | License || {{ #if:{{{License|}}} | [[License:={{{License}}}]] | not available }}
|-
| class="InfoBoxCol" | Affiliation || {{ #if: {{{Affiliation1|}}} | *[[affiliated to::{{{Affiliation1}}}]] | not available }}{{ #if: {{{Affiliation2|}}} | *[[affiliated to::{{{Affiliation2}}}]] | }}{{ #if: {{{Affiliation3|}}} | *[[affiliated to::{{{Affiliation3}}}]] | }}{{ #if: {{{Affiliation4|}}} | *[[affiliated to::{{{Affiliation4}}}]] | }}{{ #if: {{{Affiliation5|}}} | *[[affiliated to::{{{Affiliation5}}}]] | }}{{ #if: {{{Affiliation6|}}} | *[[affiliated to::{{{Affiliation6}}}]] | }}{{ #if: {{{Affiliation7|}}} | *[[affiliated to::{{{Affiliation7}}}]] | }}{{ #if: {{{Affiliation8|}}} | *[[affiliated to::{{{Affiliation8}}}]] | }}{{ #if: {{{Affiliation9|}}} | *[[affiliated to::{{{Affiliation9}}}]] | }}
|}
</div>

<div style="display:block;float:left;width:64%;margin-bottom:2em;">
[[description:={{{Description}}}]]

== Versions & Compatibility ==

This section shows available versions of [[ID:={{{PluginID}}}|{{{PluginID}}}]] and for each version its '''compatible Protégé versions''' and '''necessary plugins'''.

<ask mainlabel="Version" format="broadtable" link="all" sort="version number" order="descending" default="no version available for this plugin">
[[Category:Version]] [[version of::{{PAGENAME}}]]
[[compatible with::*|compatible with]]
[[depends on::*|necessary plugins]]
</ask>

<div style="display: block;float:left;background:#E6FFCC;border:1px solid #B0FF5C;padding: 5px 0px 5px 0px;margin: 1em 0 2em 0;">
<inputbox>
type=create
default={{PAGENAME}} X.X.X
align=left
break=no
buttonlabel=Add New Version
bgcolor=#E6FFCC
preload=Template:AddNewPluginVersion
</inputbox>
</div>

== Changelog ==
<center>
<ask mainlabel="Version" format="broadtable" link="all" sort="version number" order="descending" default="no version available for this plugin">
[[Category:Version]] [[version of::{{PAGENAME}}]]
[[Changelog:=*|Changes in this version]]
</ask>
</center>

</div>

[[Category:Plugin]]

</includeonly><noinclude>
{{{{FULLPAGENAME}}/doc}}

</noinclude>

Template:Plugin/doc

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Alexskr: 1 revision(s)

[[Template:Plugin]] should be used to create a new page for a plugin.

The following parameters have to be provided:

* NameOfPlugin
* Screenshot
* NameOfDeveloper
* LastUpdated
* CurrentVersion
* HomepageURL
* Application
* Topic
* License
* Affiliation
* Description

<includeonly>


[[Category:Plugin]]



</includeonly>

Template:PluginWikiHeader

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<div style="display:block;float:left;width:100%;text-align:center;margin:0 0 1.5em 0;padding:0;">
<p style="padding:0;margin:0;font-size:1.9em;font-weight:bold;word-spacing:-2px;">{{{ID}}}</p>
<p style="padding:0;margin:0;">{{ #if: {{{Author1|}}} | by [[{{{Author1}}}]] }}{{ #if: {{{Author2|}}} | , [[{{{Author2}}}]] }}{{ #if: {{{Author3|}}} | , [[{{{Author3}}}]] }}{{ #if: {{{Author4|}}} | , [[{{{Author4}}}]] }}{{ #if: {{{Author5|}}} | , [[{{{Author5}}}]] }}{{ #if: {{{Author6|}}} | , [[{{{Author6}}}]] }}{{ #if: {{{Author7|}}} | , [[{{{Author7}}}]] }}{{ #if: {{{Author8|}}} | , [[{{{Author8}}}]] }}{{ #if: {{{Author9|}}} | , [[{{{Author9}}}]] }}</p>
</div>

Template:Relation

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{{PluginWikiHeader|ID=Relation - {{PAGENAME}}}}

{{{Description}}}

==Instances for ''{{PAGENAME}}''==
<ask format="table">[[{{PAGENAME}}::+|Domain]] [[{{PAGENAME}}::*|{{PAGENAME}}]]</ask>

Template:Topic

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<noinclude>This template creates a page for a topic. If available it automatically provides a list with all plugins of this topic.</noinclude>
<includeonly>{{PluginWikiHeader|ID=Topic - {{{TopicID}}}}}

<ask format="template" template="TopicTransform" default="No plugins available yet.">
[[Category:Plugin]] [[has topic::{{PAGENAME}}]] [[Description:=*]] [[Screenshot:=*]]
</ask>

[[Category:Topic]]

</includeonly>

Template:TopicTransform

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Alexskr: 1 revision(s)

{| style="display:block;float:left;width:100%;margin-top:1em;border:none"
|-
| rowspan="2" style="text-align:center;width:180px;" | [[Image:{{{3}}}|thumb|170px|center]] || {{{1}}}
|-
| style="vertical-align:top;" | {{{2}}}
|}

Template:Version

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Alexskr: 1 revision(s)

#REDIRECT [[Template:VersionOfPlugin]]

Template:Version/doc

2007-07-11T17:41:30Z

Alexskr: 1 revision(s)

[[Template:Version]] should be used to create a new page for a version of a plugin or an application.

The following parameters have to be provided:

*VersionFor
*Number
*File
*CompatibleWith
*DependsOn
*Changelog

<includeonly>

</includeonly>

Template:VersionOfApplication

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Alexskr: 1 revision(s)

Template:VersionOfApplication/doc

2007-07-11T17:41:30Z

Alexskr: 1 revision(s)

[[Template:VersionOfApplication]] should be used to create a new page for a version of an application. It differs from [[Template:VersionOfPlugin]] so it has no ''compatible with'' and ''depends on'' parameters.

The following parameters have to be provided:

*VersionOf
*Number
*File
*Changelog

<includeonly>

</includeonly>

Template:VersionOfPlugin

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Alexskr: 1 revision(s)

<includeonly>{{PluginWikiHeader|ID={{{VersionOf}}} {{{Number}}}}}
<div class="PluginSidebar">
{| class="PluginWikiInfoBox" cellspacing="0" cellpadding="5"
|-
| class="InfoBoxColFirst" | Version || {{ #if:{{{Number|}}} | [[Version number:={{{Number}}}]] | not available }}
|-
| class="InfoBoxCol" | Of || {{ #if:{{{VersionOf}}} | [[version of::{{{VersionOf}}}]] | not available }}
|-
| class="InfoBoxCol" | Last update || {{ #if:{{{LastUdate}}} | [[Last update:={{{LastUpdate}}}]] | not available }}
|-
| class="InfoBoxCol" | Download || {{ #if:{{{File|}}} | [[Version file:={{{File}}}|[{{{File}}} {{{VersionOf}}} {{{Number}}}]]] | not available }}
|-
| class="InfoBoxCol" | Compatible Protégé Version || {{ #if:{{{CompatibleWith1|}}} | *[[compatible with::{{{CompatibleWith1}}}]] | not available }}{{ #if:{{{CompatibleWith2|}}} | *[[compatible with::{{{CompatibleWith2}}}]] | }}{{ #if:{{{CompatibleWith3|}}} | *[[compatible with::{{{CompatibleWith3}}}]] | }}{{ #if:{{{CompatibleWith4|}}} | *[[compatible with::{{{CompatibleWith4}}}]] | }}{{ #if:{{{CompatibleWith5|}}} | *[[compatible with::{{{CompatibleWith5}}}]] | }}{{ #if:{{{CompatibleWith6|}}} | *[[compatible with::{{{CompatibleWith6}}}]] | }}{{ #if:{{{CompatibleWith7|}}} | *[[compatible with::{{{CompatibleWith7}}}]] | }}{{ #if:{{{CompatibleWith8|}}} | *[[compatible with::{{{CompatibleWith8}}}]] | }}{{ #if:{{{CompatibleWith9|}}} | *[[compatible with::{{{CompatibleWith9}}}]] | }}
|}
</div>

<div style="display:block;float:left;width:64%;margin:0 0 2em 0;">
== Dependency ==
The following plugins are necessary for {{{VersionOf}}} {{{Number}}} to work.

{{ #if:{{{DependsOn1|}}} | *[[depends on::{{{DependsOn1}}}]] | not available }}{{ #if:{{{DependsOn2|}}} | *[[depends on::{{{DependsOn2}}}]] | }}{{ #if:{{{DependsOn3|}}} | *[[depends on::{{{DependsOn3}}}]] | }}{{ #if:{{{DependsOn4|}}} | *[[depends on::{{{DependsOn4}}}]] | }}{{ #if:{{{DependsOn5|}}} | *[[depends on::{{{DependsOn5}}}]] | }}{{ #if:{{{DependsOn6|}}} | *[[depends on::{{{DependsOn6}}}]] | }}{{ #if:{{{DependsOn7|}}} | *[[depends on::{{{DependsOn7}}}]] | }}{{ #if:{{{DependsOn8|}}} | *[[depends on::{{{DependsOn8}}}]] | }}{{ #if:{{{DependsOn9|}}} | *[[depends on::{{{DependsOn9}}}]] | }}

{{ #if:{{{Changelog|}}} | == Changelog ==

[[Changelog:={{{Changelog}}}]] | == Changelog ==

no information about changes }}

</div>

[[Category:Version]]

</includeonly><noinclude>
{{{{FULLPAGENAME}}/doc}}
</noinclude>

Template:VersionOfPlugin/doc

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Alexskr: 1 revision(s)

[[Template:VersionOfPlugin]] should be used to create a new page for a version of a plugin.

The following parameters have to be provided:

*VersionOf
*Number
*File
*CompatibleWith
*DependsOn
*Changelog

<includeonly>

</includeonly>

Template:Application

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<includeonly>{{PluginWikiHeader|ID={{{ApplicationID}}}|{{ #if:{{{DevelopedBy1|}}} | Author1={{{DevelopedBy1}}} }}}}
<div style="display:block;float:left;width:100%;">
<div class="PluginSidebar">{{ #if: {{{Screenshot|}}} | <p>[[screenshot:={{{Screenshot}}}|[[Image:{{{Screenshot}}}|thumb|100%|center|Screenshot]]]]</p> | }}
{| cellspacing="0" cellpadding="5" class="PluginWikiInfoBox"
|-
| class="InfoBoxColFirst" | Developed by: || {{ #if:{{{DevelopedBy1|}}} | [[developed by::{{{DevelopedBy1}}}]] | not available }}
|-
| class="InfoBoxCol" | Last Update: || {{ #if:{{{LastUpdate|}}} | [[Last update:={{{LastUpdate}}}]] | notavailable }}
|-
| class="InfoBoxCol" | Current Version: || [[Version number:= <ask format="template" template="CurrentVersion" limit="1" searchlabel="" sort="version number" order="descending" default="no version available">[[Category:Version]] [[version of::{{PAGENAME}}]] [[Version number:=*]]</ask>]]
|-
| class="InfoBoxCol" | Homepage: || {{ #if:{{{HomepageURL|}}} | [[Homepage:={{{HomepageURL}}}|[{{{HomepageURL}}} {{{ApplicationID}}} Website]]] | not available }}
|-
| class="InfoBoxCol" | Affiliation: || {{ #if:{{{Affiliation1|}}} | *[[affiliated to::{{{Affiliation1}}}]] | not available }}{{ #if:{{{Affiliation2|}}} | *[[affiliated to::{{{Affiliation2}}}]] | }}
{{ #if:{{{Affiliation3|}}} | *[[affiliated to::{{{Affiliation3}}}]] | }}{{ #if:{{{Affiliation4|}}} | *[[affiliated to::{{{Affiliation4}}}]] | }}{{ #if:{{{Affiliation5|}}} | *[[affiliated to::{{{Affiliation5}}}]] | }}{{ #if:{{{Affiliation6|}}} | *[[affiliated to::{{{Affiliation6}}}]] | }}{{ #if:{{{Affiliation7|}}} | *[[affiliated to::{{{Affiliation7}}}]] | }}{{ #if:{{{Affiliation8|}}} | *[[affiliated to::{{{Affiliation8}}}]] | }}{{ #if:{{{Affiliation9|}}} | *[[affiliated to::{{{Affiliation9}}}]] | }}
|}
</div>

<div style="display:block;float:left;width:64%;margin:0 0 2em 0;">

[[Description:={{{Description}}}]]

== Plugins for {{PAGENAME}} ==

This section shows available plugins for [[ID:={{{ApplicationID}}}|{{{ApplicationID}}}]] and topics for each of these plugins.

<ask format="broadtable" default="no plugins available">
[[Category:Plugin]] [[for application::{{PAGENAME}}]] [[has topic::*]]
</ask>

<div style="display: block;float:left;background:#E6FFCC;border:1px solid #B0FF5C;padding: 5px 0px 5px 0px;margin:1em 0 2em 0;">
<inputbox>
type=create
align=left
break=no
buttonlabel=Add New Plugin
bgcolor=#E6FFCC
preload=Template:AddNewPlugin
</inputbox>
</div>

== Versions for {{PAGENAME}} ==

This section shows available versions of {{{ApplicationID}}} and changes in each version.

<ask format="broadtable" sort="version number" order="descending" default="no version available for this application">
[[Category:Version]] [[version of::{{PAGENAME}}]]
[[Changelog:=*|Changelog]]
</ask>

<div style="display: block;float:left;background:#E6FFCC;border:1px solid #B0FF5C;padding: 5px 0px 5px 0px;margin:1em 0 2em 0;">
<inputbox>
type=create
default={{PAGENAME}} X.X.X
align=left
break=no
buttonlabel=Add New Version
bgcolor=#E6FFCC
preload=Template:AddNewApplicationVersion
</inputbox>
</div>

</div>
</div>

<div style="display:block;float:left;width:100%;margin:0 0 1.5em 0;">
__TOC__
</div>

[[Category:Application]]

</includeonly><noinclude>
{{{{FULLPAGENAME}}/doc}}
</noinclude>

Template:Application/doc

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Alexskr: 1 revision(s)

[[Template:Application]] should be used when creating new applications.

The following parameters have to be provided:

*ApplicationID
*Screenshot
*DevelopedBy
*LastUpdate
*CurrentVersion
*HomepageURL
*Affiliation
*Description

Project Management

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Alexskr: 1 revision(s)

{{Topic|
TopicID={{PAGENAME}}}}

Reasoning

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Alexskr: 1 revision(s)

{{Topic|TopicID={{PAGENAME}}}}

Slot Widget

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Alexskr: 1 revision(s)

[[Category:PluginType]]

Stanford Center for Biomedical Informatics Research

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Alexskr: 1 revision(s)

{{Organization|
OrganizationID=Stanford Medical Informatics|
HomepageURL=http://www.smi.stanford.edu|
Phone=(650) 723-6979|
Description=Stanford Medical Informatics has developed Protege and is part of Stanford University School of Medicine.}}

Stanford University

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Alexskr: 1 revision(s)

{{Organization|
OrganizationID=Stanford University|
HomepageURL=http://www.stanford.edu|
Description=Located between San Francisco and San Jose in the heart of Silicon Valley, Stanford University is recognized as one of the world's leading research and teaching institutions.}}

Tab Widget

2007-07-11T17:22:29Z

Alexskr: 1 revision(s)

[[Category:PluginType]]

Terminologies

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{{Topic|
TopicID={{PAGENAME}}}}

Validation

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Alexskr: 1 revision(s)

{{Topic|
TopicID={{PAGENAME}}}}

Visualization

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Alexskr: 1 revision(s)

{{Topic|TopicID={{PAGENAME}}}}

Import

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Alexskr: 1 revision(s)

{{Topic|TopicID={{PAGENAME}}}}

Inference

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Alexskr: 1 revision(s)

{{Topic|TopicID={{PAGENAME}}}}